The 2.0 version of rSNPBase

Variant report

Variant rs55642420
Chromosome Location chr2:72929157-72929158
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:72896800-72943000 Weak transcription Primary T cells from cord blood blood
2 chr2:72903600-72937400 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr2:72904400-72939000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr2:72905600-72943200 Weak transcription Primary T helper cells fromperipheralblood blood
5 chr2:72905800-72984400 Weak transcription Aorta Aorta
6 chr2:72912200-72942800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr2:72913400-72945000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr2:72917000-72950000 Weak transcription Brain Angular Gyrus brain
9 chr2:72917200-72946200 Weak transcription HMEC breast
10 chr2:72917400-72944800 Weak transcription NHEK skin
11 chr2:72920400-72945000 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr2:72922000-72946200 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr2:72922200-72942800 Weak transcription Placenta Placenta
14 chr2:72922400-72929800 Weak transcription Rectal Smooth Muscle rectum
15 chr2:72922400-72939400 Weak transcription Stomach Smooth Muscle stomach
16 chr2:72922400-72941000 Weak transcription Left Ventricle heart
17 chr2:72922400-72942800 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr2:72922400-72945800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr2:72922400-72949800 Weak transcription Fetal Brain Female brain
20 chr2:72922400-72972000 Weak transcription Right Ventricle heart
21 chr2:72922400-72976200 Weak transcription Psoas Muscle Psoas
22 chr2:72922600-72929200 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr2:72922600-72933400 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr2:72922600-72942800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr2:72922600-72951000 Weak transcription Fetal Muscle Leg muscle
26 chr2:72922800-72939400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr2:72922800-72949600 Weak transcription Muscle Satellite Cultured Cells --
28 chr2:72923000-72932600 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr2:72923000-72939400 Weak transcription HepG2 liver
30 chr2:72923000-72944600 Weak transcription Fetal Lung lung
31 chr2:72923000-72945600 Weak transcription Fetal Stomach stomach
32 chr2:72923000-72972800 Weak transcription Brain Inferior Temporal Lobe brain
33 chr2:72923000-73008600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr2:72923200-72946000 Weak transcription A549 lung
35 chr2:72923600-72958200 Weak transcription Brain Cingulate Gyrus brain
36 chr2:72924000-72941400 Weak transcription Fetal Heart heart
37 chr2:72924000-72945200 Weak transcription Ovary ovary
38 chr2:72924200-72936400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr2:72927600-72946200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr2:72927800-72943200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr2:72928400-72939400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr2:72929000-72951200 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015