Variant report

Variant	rs67869181
Chromosome Location	chr2:72864338-72864339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11126378	0.90[EUR][1000 genomes]
rs11689339	0.93[EUR][1000 genomes]
rs11884266	0.83[EUR][1000 genomes]
rs17008315	0.84[EUR][1000 genomes]
rs57192957	0.84[EUR][1000 genomes]
rs60314340	0.96[EUR][1000 genomes]
rs66469454	0.96[EUR][1000 genomes]
rs6713712	0.84[EUR][1000 genomes]
rs6720889	0.80[EUR][1000 genomes]
rs6736649	0.95[EUR][1000 genomes]
rs6749495	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72840200-72878600	Weak transcription	Aorta	Aorta
2	chr2:72843800-72866200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:72847400-72865600	Weak transcription	Right Atrium	heart
4	chr2:72847400-72865800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:72847400-72869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:72854200-72868400	Weak transcription	Fetal Stomach	stomach
7	chr2:72856000-72865600	Weak transcription	Left Ventricle	heart
8	chr2:72857200-72865800	Weak transcription	Fetal Heart	heart
9	chr2:72857400-72865800	Weak transcription	Ovary	ovary
10	chr2:72858400-72904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links