Variant report

Variant	rs10496184
Chromosome Location	chr2:72681710-72681711
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72675277..72678684-chr2:72678721..72682329,4	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10496185	0.85[CEU][hapmap]
rs11126367	0.91[EUR][1000 genomes]
rs11126369	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11675264	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11675268	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11685876	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11689339	0.85[CEU][hapmap]
rs11689707	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs11695000	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11695629	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11884162	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11892598	0.85[CEU][hapmap]
rs17008186	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17008188	0.97[EUR][1000 genomes]
rs17008208	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17008241	0.86[CEU][hapmap]
rs17008293	0.86[CEU][hapmap]
rs17263172	1.00[CEU][hapmap]
rs1949377	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2901190	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs55747300	0.82[EUR][1000 genomes]
rs55825364	0.91[EUR][1000 genomes]
rs56777837	0.97[EUR][1000 genomes]
rs58967293	0.84[EUR][1000 genomes]
rs59176504	0.92[EUR][1000 genomes]
rs60563535	0.92[EUR][1000 genomes]
rs60580301	0.84[EUR][1000 genomes]
rs66489235	0.91[EUR][1000 genomes]
rs6713712	0.86[CEU][hapmap]
rs6739768	0.86[CEU][hapmap]
rs6740390	0.85[CEU][hapmap]
rs67491855	0.90[EUR][1000 genomes]
rs6756070	0.85[CEU][hapmap];0.81[YRI][hapmap]
rs72845175	0.89[EUR][1000 genomes]
rs7557942	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7561471	0.91[EUR][1000 genomes]
rs7571517	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7577244	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7604083	0.86[CEU][hapmap]
rs764766	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999179	chr2:72561463-72761103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1008335	chr2:72561463-72819704	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72647400-72688800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:72655000-72690400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:72655800-72690600	Weak transcription	Left Ventricle	heart
4	chr2:72665800-72689000	Weak transcription	Adipose Nuclei	Adipose
5	chr2:72672000-72690400	Weak transcription	Ovary	ovary
6	chr2:72672000-72702200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:72672200-72688800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:72672800-72689400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:72675200-72689800	Weak transcription	Fetal Heart	heart
10	chr2:72676600-72684200	Weak transcription	Brain Anterior Caudate	brain
11	chr2:72680800-72690400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:72680800-72702000	Weak transcription	Fetal Stomach	stomach
13	chr2:72681400-72682400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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