Variant report
Variant | rs68172337 |
---|---|
Chromosome Location | chr2:72466465-72466466 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:72464976..72467489-chr2:72497320..72499633,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10173152 | 1.00[ASN][1000 genomes] |
rs10175824 | 1.00[ASN][1000 genomes] |
rs10176044 | 1.00[ASN][1000 genomes] |
rs10193621 | 1.00[ASN][1000 genomes] |
rs10197528 | 1.00[ASN][1000 genomes] |
rs10203221 | 1.00[ASN][1000 genomes] |
rs10207869 | 1.00[ASN][1000 genomes] |
rs10496183 | 1.00[ASN][1000 genomes] |
rs1079144 | 1.00[ASN][1000 genomes] |
rs11126367 | 1.00[ASN][1000 genomes] |
rs11674508 | 1.00[ASN][1000 genomes] |
rs11680197 | 1.00[ASN][1000 genomes] |
rs11681845 | 1.00[ASN][1000 genomes] |
rs11682749 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11684981 | 1.00[ASN][1000 genomes] |
rs11685876 | 1.00[ASN][1000 genomes] |
rs11685903 | 1.00[ASN][1000 genomes] |
rs11695000 | 1.00[ASN][1000 genomes] |
rs11884162 | 1.00[ASN][1000 genomes] |
rs11884225 | 1.00[ASN][1000 genomes] |
rs11884869 | 1.00[ASN][1000 genomes] |
rs11887356 | 1.00[ASN][1000 genomes] |
rs11890482 | 1.00[ASN][1000 genomes] |
rs11891573 | 1.00[ASN][1000 genomes] |
rs11894521 | 1.00[ASN][1000 genomes] |
rs11897200 | 1.00[ASN][1000 genomes] |
rs11899270 | 1.00[ASN][1000 genomes] |
rs11899672 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11902051 | 1.00[ASN][1000 genomes] |
rs11903453 | 1.00[ASN][1000 genomes] |
rs11903908 | 1.00[ASN][1000 genomes] |
rs11903912 | 1.00[ASN][1000 genomes] |
rs13411648 | 1.00[ASN][1000 genomes] |
rs1387 | 1.00[ASN][1000 genomes] |
rs1517179 | 1.00[ASN][1000 genomes] |
rs17007922 | 1.00[ASN][1000 genomes] |
rs17007926 | 1.00[ASN][1000 genomes] |
rs17007939 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17007984 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17008057 | 1.00[ASN][1000 genomes] |
rs17008082 | 1.00[ASN][1000 genomes] |
rs17008143 | 1.00[ASN][1000 genomes] |
rs17008186 | 1.00[ASN][1000 genomes] |
rs17008188 | 1.00[ASN][1000 genomes] |
rs17040320 | 1.00[ASN][1000 genomes] |
rs1914339 | 1.00[ASN][1000 genomes] |
rs1949377 | 1.00[ASN][1000 genomes] |
rs28503372 | 1.00[ASN][1000 genomes] |
rs2901190 | 1.00[ASN][1000 genomes] |
rs34172703 | 1.00[ASN][1000 genomes] |
rs35064163 | 1.00[ASN][1000 genomes] |
rs4507127 | 1.00[ASN][1000 genomes] |
rs4508623 | 1.00[ASN][1000 genomes] |
rs55700162 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55714718 | 1.00[ASN][1000 genomes] |
rs55727931 | 1.00[ASN][1000 genomes] |
rs55728837 | 1.00[ASN][1000 genomes] |
rs55825364 | 1.00[ASN][1000 genomes] |
rs55840408 | 1.00[ASN][1000 genomes] |
rs55939880 | 1.00[ASN][1000 genomes] |
rs56109129 | 1.00[ASN][1000 genomes] |
rs56173504 | 1.00[ASN][1000 genomes] |
rs56178437 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56184446 | 1.00[ASN][1000 genomes] |
rs56718524 | 1.00[ASN][1000 genomes] |
rs56777837 | 1.00[ASN][1000 genomes] |
rs57286048 | 1.00[ASN][1000 genomes] |
rs57730885 | 1.00[ASN][1000 genomes] |
rs58033567 | 1.00[ASN][1000 genomes] |
rs58035683 | 1.00[ASN][1000 genomes] |
rs58582296 | 1.00[ASN][1000 genomes] |
rs59176504 | 1.00[ASN][1000 genomes] |
rs59881252 | 1.00[ASN][1000 genomes] |
rs59974816 | 1.00[ASN][1000 genomes] |
rs60536402 | 1.00[ASN][1000 genomes] |
rs60563535 | 1.00[ASN][1000 genomes] |
rs60806585 | 1.00[ASN][1000 genomes] |
rs60872571 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60977474 | 1.00[ASN][1000 genomes] |
rs61037557 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61448485 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6546751 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6546754 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6546761 | 1.00[ASN][1000 genomes] |
rs6546763 | 1.00[ASN][1000 genomes] |
rs6546769 | 1.00[ASN][1000 genomes] |
rs66489235 | 1.00[ASN][1000 genomes] |
rs66539158 | 1.00[ASN][1000 genomes] |
rs66560019 | 1.00[ASN][1000 genomes] |
rs66827358 | 1.00[ASN][1000 genomes] |
rs66888584 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs66920016 | 1.00[ASN][1000 genomes] |
rs67085067 | 1.00[ASN][1000 genomes] |
rs6709233 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6709493 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6711442 | 1.00[ASN][1000 genomes] |
rs6712930 | 1.00[ASN][1000 genomes] |
rs6712989 | 1.00[ASN][1000 genomes] |
rs67166018 | 1.00[ASN][1000 genomes] |
rs6717250 | 1.00[ASN][1000 genomes] |
rs6717899 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6718052 | 1.00[ASN][1000 genomes] |
rs6723136 | 1.00[ASN][1000 genomes] |
rs6723380 | 1.00[ASN][1000 genomes] |
rs67235968 | 1.00[ASN][1000 genomes] |
rs6724795 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6727580 | 1.00[ASN][1000 genomes] |
rs6729219 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6731631 | 1.00[ASN][1000 genomes] |
rs6731988 | 1.00[ASN][1000 genomes] |
rs6733532 | 1.00[ASN][1000 genomes] |
rs6733538 | 1.00[ASN][1000 genomes] |
rs6735400 | 1.00[ASN][1000 genomes] |
rs6738521 | 1.00[ASN][1000 genomes] |
rs6740982 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6743881 | 1.00[ASN][1000 genomes] |
rs6746583 | 1.00[ASN][1000 genomes] |
rs6746586 | 1.00[ASN][1000 genomes] |
rs67491855 | 1.00[ASN][1000 genomes] |
rs6755440 | 1.00[ASN][1000 genomes] |
rs6758689 | 1.00[ASN][1000 genomes] |
rs719119 | 1.00[ASN][1000 genomes] |
rs719120 | 1.00[ASN][1000 genomes] |
rs72835256 | 1.00[ASN][1000 genomes] |
rs72835276 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72841783 | 1.00[ASN][1000 genomes] |
rs72841795 | 1.00[ASN][1000 genomes] |
rs72845175 | 1.00[ASN][1000 genomes] |
rs72904482 | 1.00[ASN][1000 genomes] |
rs72908315 | 1.00[ASN][1000 genomes] |
rs72908317 | 1.00[ASN][1000 genomes] |
rs7420583 | 1.00[ASN][1000 genomes] |
rs7424190 | 1.00[ASN][1000 genomes] |
rs7557942 | 1.00[ASN][1000 genomes] |
rs7558666 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7559116 | 1.00[ASN][1000 genomes] |
rs7561471 | 1.00[ASN][1000 genomes] |
rs7565358 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7569059 | 1.00[ASN][1000 genomes] |
rs7571483 | 1.00[ASN][1000 genomes] |
rs7571517 | 1.00[ASN][1000 genomes] |
rs7575050 | 1.00[ASN][1000 genomes] |
rs7575090 | 1.00[ASN][1000 genomes] |
rs7575536 | 1.00[ASN][1000 genomes] |
rs7577244 | 1.00[ASN][1000 genomes] |
rs7577354 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7577860 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7583268 | 1.00[ASN][1000 genomes] |
rs7585598 | 1.00[ASN][1000 genomes] |
rs7587370 | 1.00[ASN][1000 genomes] |
rs7591608 | 1.00[ASN][1000 genomes] |
rs7592404 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7596126 | 1.00[ASN][1000 genomes] |
rs7599755 | 1.00[ASN][1000 genomes] |
rs7600134 | 1.00[ASN][1000 genomes] |
rs7603342 | 1.00[ASN][1000 genomes] |
rs7603535 | 1.00[ASN][1000 genomes] |
rs7604296 | 1.00[ASN][1000 genomes] |
rs7608054 | 1.00[ASN][1000 genomes] |
rs9309465 | 1.00[ASN][1000 genomes] |
rs9677947 | 1.00[ASN][1000 genomes] |
rs9678682 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv963919 | chr2:72372956-72830387 | Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv1005487 | chr2:72464784-72819704 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:72433200-72468600 | Weak transcription | Right Atrium | heart |
2 | chr2:72464200-72468000 | Weak transcription | Adipose Nuclei | Adipose |
3 | chr2:72464400-72468600 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
4 | chr2:72465000-72468200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
5 | chr2:72465000-72468200 | Weak transcription | A549 | lung |
6 | chr2:72465200-72468400 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
7 | chr2:72465400-72468000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
8 | chr2:72465600-72468600 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
9 | chr2:72465800-72468400 | Weak transcription | Osteobl | bone |
10 | chr2:72465800-72490400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
11 | chr2:72466000-72468000 | Weak transcription | NHDF-Ad | bronchial |