Variant report

Variant	rs9689949
Chromosome Location	chr6:44690942-44690943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1000599	1.00[EUR][1000 genomes]
rs2093346	1.00[EUR][1000 genomes]
rs56793534	1.00[EUR][1000 genomes]
rs6905609	1.00[EUR][1000 genomes]
rs6926912	1.00[EUR][1000 genomes]
rs73734734	1.00[EUR][1000 genomes]
rs73734736	1.00[EUR][1000 genomes]
rs73734737	1.00[EUR][1000 genomes]
rs7770848	1.00[EUR][1000 genomes]
rs7775570	1.00[EUR][1000 genomes]
rs9463016	1.00[EUR][1000 genomes]
rs9472333	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817071	chr6:44670110-44698829	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44667200-44691000	Weak transcription	Right Atrium	heart
2	chr6:44682400-44691000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:44689600-44691400	Enhancers	GM12878-XiMat	blood
4	chr6:44689600-44693200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:44689800-44691000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44690200-44691800	Enhancers	Brain Germinal Matrix	brain
7	chr6:44690200-44693200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:44690400-44698000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:44690800-44691600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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