Variant report

Variant	rs9705687
Chromosome Location	chr16:35198455-35198456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 195 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs10772207	0.96[EUR][1000 genomes]
rs10844946	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844947	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10844950	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844952	0.85[EUR][1000 genomes]
rs10844953	0.85[ASN][1000 genomes]
rs10844958	0.90[EUR][1000 genomes]
rs10844959	0.90[EUR][1000 genomes]
rs10844967	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844969	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844971	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844981	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10844982	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11053366	0.84[EUR][1000 genomes]
rs11053370	0.81[EUR][1000 genomes]
rs11053385	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053397	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053400	0.85[EUR][1000 genomes]
rs11053405	0.86[EUR][1000 genomes]
rs11053410	0.88[EUR][1000 genomes]
rs11053411	0.89[EUR][1000 genomes]
rs11053413	0.90[EUR][1000 genomes]
rs11053451	0.82[EUR][1000 genomes]
rs11053459	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11494609	0.82[EUR][1000 genomes]
rs11494610	0.82[EUR][1000 genomes]
rs11494611	0.82[EUR][1000 genomes]
rs11494612	0.87[EUR][1000 genomes]
rs11494894	0.86[EUR][1000 genomes]
rs11494895	0.87[EUR][1000 genomes]
rs11494902	0.87[EUR][1000 genomes]
rs11494905	0.83[EUR][1000 genomes]
rs11494906	0.83[EUR][1000 genomes]
rs11494907	0.84[EUR][1000 genomes]
rs11494908	0.84[EUR][1000 genomes]
rs11502497	0.83[EUR][1000 genomes]
rs11502500	0.85[ASN][1000 genomes]
rs11502876	0.85[ASN][1000 genomes]
rs11502878	0.82[ASN][1000 genomes]
rs11502879	0.86[ASN][1000 genomes]
rs11502880	0.86[ASN][1000 genomes]
rs11513301	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11513561	0.82[EUR][1000 genomes]
rs11513564	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11513565	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11513566	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11513567	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11513571	0.85[EUR][1000 genomes]
rs11513581	0.86[EUR][1000 genomes]
rs11513585	0.86[EUR][1000 genomes]
rs11513586	0.89[EUR][1000 genomes]
rs11519142	0.82[EUR][1000 genomes]
rs11519444	0.83[EUR][1000 genomes]
rs11519449	0.86[EUR][1000 genomes]
rs11519461	0.82[EUR][1000 genomes]
rs11609335	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11610276	0.91[EUR][1000 genomes]
rs11610981	0.87[EUR][1000 genomes]
rs11612415	0.87[EUR][1000 genomes]
rs11829052	0.81[ASN][1000 genomes]
rs11829528	0.87[ASN][1000 genomes]
rs11830389	0.82[EUR][1000 genomes]
rs11836786	0.88[EUR][1000 genomes]
rs12297407	0.83[ASN][1000 genomes]
rs12301687	0.86[ASN][1000 genomes]
rs12302960	0.86[ASN][1000 genomes]
rs12305619	0.86[ASN][1000 genomes]
rs12310268	0.86[ASN][1000 genomes]
rs12313382	0.86[ASN][1000 genomes]
rs12314898	0.86[ASN][1000 genomes]
rs12314985	0.86[ASN][1000 genomes]
rs12315895	0.86[ASN][1000 genomes]
rs12319663	0.81[ASN][1000 genomes]
rs12321663	0.85[ASN][1000 genomes]
rs12322100	0.81[ASN][1000 genomes]
rs12322956	0.80[EUR][1000 genomes]
rs12372031	0.88[EUR][1000 genomes]
rs12372042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12578464	0.83[ASN][1000 genomes]
rs12580915	0.83[ASN][1000 genomes]
rs12815424	0.81[EUR][1000 genomes]
rs12821945	0.86[EUR][1000 genomes]
rs12831836	0.90[EUR][1000 genomes]
rs2068119	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28787415	0.86[ASN][1000 genomes]
rs35659506	0.89[EUR][1000 genomes]
rs56328203	0.87[ASN][1000 genomes]
rs57287646	0.87[ASN][1000 genomes]
rs60360547	0.83[ASN][1000 genomes]
rs60624296	0.86[ASN][1000 genomes]
rs61273119	0.85[ASN][1000 genomes]
rs66817342	0.86[ASN][1000 genomes]
rs67334444	0.87[ASN][1000 genomes]
rs71459548	0.85[EUR][1000 genomes]
rs73103596	0.85[EUR][1000 genomes]
rs73105416	0.83[ASN][1000 genomes]
rs73310621	0.85[ASN][1000 genomes]
rs73318522	0.83[ASN][1000 genomes]
rs73325503	0.87[ASN][1000 genomes]
rs9300218	0.85[ASN][1000 genomes]
rs9668027	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9668080	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9668189	0.82[EUR][1000 genomes]
rs9668321	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9668561	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9668654	0.86[EUR][1000 genomes]
rs9668673	0.81[EUR][1000 genomes]
rs9668745	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9668857	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9668949	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9668982	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669001	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669311	0.91[EUR][1000 genomes]
rs9669324	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669691	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9705387	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9705402	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9705446	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9705470	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9705501	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9705544	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9705579	0.84[EUR][1000 genomes]
rs9705598	0.83[EUR][1000 genomes]
rs9705614	0.85[EUR][1000 genomes]
rs9705638	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9705792	0.84[EUR][1000 genomes]
rs9705795	0.84[EUR][1000 genomes]
rs9705820	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9705844	0.82[EUR][1000 genomes]
rs9705910	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9705927	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9705951	0.86[EUR][1000 genomes]
rs9705952	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9705955	0.82[EUR][1000 genomes]
rs9705967	0.83[EUR][1000 genomes]
rs9705973	0.83[EUR][1000 genomes]
rs9705974	0.83[EUR][1000 genomes]
rs9706006	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9706015	0.82[EUR][1000 genomes]
rs9706043	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9706112	0.82[AFR][1000 genomes]
rs9706124	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9706185	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9706228	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9706235	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9706284	0.83[EUR][1000 genomes]
rs9706309	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9706314	0.83[EUR][1000 genomes]
rs9706357	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9706364	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9706435	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9706437	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9706457	0.90[EUR][1000 genomes]
rs9706464	0.83[ASN][1000 genomes]
rs9706509	0.82[EUR][1000 genomes]
rs9706515	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9738316	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9738401	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9738748	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9739411	0.90[EUR][1000 genomes]
rs9739613	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9739623	0.83[EUR][1000 genomes]
rs9739958	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9795569	0.83[EUR][1000 genomes]
rs9971663	0.86[ASN][1000 genomes]
rs9971769	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056617	chr16:34543711-35283214	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv572385	chr16:34583626-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
3	nsv1059363	chr16:34935402-35283214	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv482777	chr16:35124884-35279329	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv572391	chr16:35145957-35228412	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv984237	chr16:35148868-35285801	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv572393	chr16:35152890-35219549	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv572396	chr16:35162035-35232318	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
9	nsv572401	chr16:35168832-35244412	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	nsv527568	chr16:35168832-35249350	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
11	nsv572404	chr16:35174439-35228412	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
12	nsv512436	chr16:35182463-35199087	Active TSS Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv572414	chr16:35184306-35204644	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv572415	chr16:35184306-35213863	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv572416	chr16:35184306-35219549	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv572417	chr16:35184306-35228412	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv572418	chr16:35184306-35232318	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
18	nsv572419	chr16:35184306-35244412	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
19	nsv572424	chr16:35184425-35204644	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
20	nsv572430	chr16:35184962-35204644	Enhancers Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv572431	chr16:35184962-35228412	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
22	nsv572434	chr16:35185800-35228412	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
23	nsv572435	chr16:35185903-35257891	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
24	esv2830263	chr16:35185903-35269324	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
25	nsv572436	chr16:35186468-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
26	esv3395580	chr16:35192551-35198849	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
27	esv3347366	chr16:35192751-35198749	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a
28	esv3331504	chr16:35198151-35262849	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
29	esv3383559	chr16:35198151-35263549	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35197200-35201400	Weak transcription	NH-A	brain

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