Variant report

Variant	rs9734043
Chromosome Location	chr11:101266207-101266208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10458946	0.81[EUR][1000 genomes]
rs10791461	0.80[EUR][1000 genomes]
rs10791465	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11224726	0.80[ASN][1000 genomes]
rs11224743	0.90[ASN][1000 genomes]
rs11224745	0.90[ASN][1000 genomes]
rs11224747	0.90[ASN][1000 genomes]
rs11224748	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11224749	0.90[ASN][1000 genomes]
rs11224750	0.87[ASN][1000 genomes]
rs11224752	0.81[EUR][1000 genomes]
rs11224753	0.81[EUR][1000 genomes]
rs11224754	0.81[EUR][1000 genomes]
rs11224755	0.81[EUR][1000 genomes]
rs11224756	0.81[EUR][1000 genomes]
rs11224758	0.81[EUR][1000 genomes]
rs12794694	0.90[ASN][1000 genomes]
rs12795968	0.81[EUR][1000 genomes]
rs12796333	0.81[EUR][1000 genomes]
rs12796675	0.90[ASN][1000 genomes]
rs12797620	0.90[ASN][1000 genomes]
rs12798288	0.81[EUR][1000 genomes]
rs12798887	0.88[ASN][1000 genomes]
rs12802904	0.81[EUR][1000 genomes]
rs12803560	0.81[EUR][1000 genomes]
rs12803803	0.81[EUR][1000 genomes]
rs12803811	0.81[EUR][1000 genomes]
rs1938987	0.82[EUR][1000 genomes]
rs1938991	0.81[EUR][1000 genomes]
rs1939001	0.81[ASN][1000 genomes]
rs2508354	0.80[EUR][1000 genomes]
rs2508357	0.80[EUR][1000 genomes]
rs2508358	0.80[EUR][1000 genomes]
rs2508359	0.82[EUR][1000 genomes]
rs2508360	0.82[EUR][1000 genomes]
rs2508362	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508365	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508366	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508367	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508368	0.90[ASN][1000 genomes]
rs2508369	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508371	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2508372	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2508375	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513146	0.82[EUR][1000 genomes]
rs2513149	0.82[EUR][1000 genomes]
rs2513150	0.82[EUR][1000 genomes]
rs2513151	0.80[EUR][1000 genomes]
rs2513152	0.80[EUR][1000 genomes]
rs2513153	0.80[EUR][1000 genomes]
rs2513154	0.80[EUR][1000 genomes]
rs2513168	0.83[EUR][1000 genomes]
rs2513169	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513170	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513172	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513174	0.83[EUR][1000 genomes]
rs2513175	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513176	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2513178	0.88[EUR][1000 genomes]
rs3018696	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3018699	0.85[EUR][1000 genomes]
rs35180268	0.82[EUR][1000 genomes]
rs35452558	0.81[EUR][1000 genomes]
rs35508193	0.90[ASN][1000 genomes]
rs6590854	0.82[EUR][1000 genomes]
rs66975288	0.82[EUR][1000 genomes]
rs7121801	0.82[EUR][1000 genomes]
rs71462683	0.90[ASN][1000 genomes]
rs744021	0.81[EUR][1000 genomes]
rs7938688	0.82[EUR][1000 genomes]
rs7939471	0.81[EUR][1000 genomes]
rs7948589	0.82[EUR][1000 genomes]
rs9633973	0.90[ASN][1000 genomes]
rs9633974	0.90[ASN][1000 genomes]
rs9633975	0.90[ASN][1000 genomes]
rs9735005	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9795186	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101253600-101268600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:101253600-101278200	Weak transcription	Ovary	ovary
3	chr11:101257800-101271000	Weak transcription	Left Ventricle	heart

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