Variant report

Variant	rs12802904
Chromosome Location	chr11:101298436-101298437
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101296877..101299041-chr11:101301262..101303756,2	MCF-7	breast:

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10458946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791460	0.94[EUR][1000 genomes]
rs10791461	0.95[EUR][1000 genomes]
rs10895098	0.83[EUR][1000 genomes]
rs10895099	0.83[EUR][1000 genomes]
rs10895107	0.94[EUR][1000 genomes]
rs11224720	0.84[EUR][1000 genomes]
rs11224722	0.84[EUR][1000 genomes]
rs11224723	0.84[EUR][1000 genomes]
rs11224725	0.84[EUR][1000 genomes]
rs11224728	0.86[EUR][1000 genomes]
rs11224729	0.86[EUR][1000 genomes]
rs11224748	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224752	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224759	0.99[ASN][1000 genomes]
rs11224760	1.00[ASN][1000 genomes]
rs11532049	0.94[EUR][1000 genomes]
rs11534488	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12222760	0.97[ASN][1000 genomes]
rs12223715	0.85[EUR][1000 genomes]
rs12226605	0.85[EUR][1000 genomes]
rs12226883	0.95[ASN][1000 genomes]
rs12575087	0.84[EUR][1000 genomes]
rs12576141	0.84[EUR][1000 genomes]
rs12786491	0.95[ASN][1000 genomes]
rs12790159	0.85[EUR][1000 genomes]
rs12790277	1.00[ASN][1000 genomes]
rs12792457	0.84[EUR][1000 genomes]
rs12794328	0.99[ASN][1000 genomes]
rs12794587	0.95[ASN][1000 genomes]
rs12795350	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12795880	0.84[EUR][1000 genomes]
rs12795968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798689	0.94[EUR][1000 genomes]
rs12803560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803803	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804031	0.85[EUR][1000 genomes]
rs12804791	0.83[EUR][1000 genomes]
rs12805525	1.00[ASN][1000 genomes]
rs12805898	0.99[ASN][1000 genomes]
rs12806219	0.83[EUR][1000 genomes]
rs17096649	0.88[AFR][1000 genomes]
rs1938972	0.92[EUR][1000 genomes]
rs1938978	0.85[EUR][1000 genomes]
rs1938979	0.85[EUR][1000 genomes]
rs1938980	0.85[EUR][1000 genomes]
rs1938987	0.96[EUR][1000 genomes]
rs1938989	0.92[EUR][1000 genomes]
rs1938990	0.94[EUR][1000 genomes]
rs1938991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1938994	0.90[EUR][1000 genomes]
rs1943766	0.85[EUR][1000 genomes]
rs1943767	0.84[EUR][1000 genomes]
rs1943768	0.85[EUR][1000 genomes]
rs2155047	0.84[EUR][1000 genomes]
rs2155048	0.84[EUR][1000 genomes]
rs2508354	0.95[EUR][1000 genomes]
rs2508357	0.95[EUR][1000 genomes]
rs2508358	0.95[EUR][1000 genomes]
rs2508359	0.96[EUR][1000 genomes]
rs2508360	0.96[EUR][1000 genomes]
rs2508362	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2508365	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2508366	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2508367	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2508368	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2508369	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2508371	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2508372	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2508375	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2513146	0.96[EUR][1000 genomes]
rs2513149	0.96[EUR][1000 genomes]
rs2513150	0.96[EUR][1000 genomes]
rs2513151	0.95[EUR][1000 genomes]
rs2513152	0.95[EUR][1000 genomes]
rs2513153	0.95[EUR][1000 genomes]
rs2513154	0.95[EUR][1000 genomes]
rs2513168	0.98[EUR][1000 genomes]
rs2513169	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2513170	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2513172	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2513174	0.98[EUR][1000 genomes]
rs2513175	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2513176	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2513178	0.92[EUR][1000 genomes]
rs3016236	0.89[EUR][1000 genomes]
rs3018696	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3018699	0.84[EUR][1000 genomes]
rs34681694	0.94[EUR][1000 genomes]
rs35180268	0.97[EUR][1000 genomes]
rs35452558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35539851	0.84[EUR][1000 genomes]
rs3949114	0.84[EUR][1000 genomes]
rs4520564	0.98[ASN][1000 genomes]
rs4582936	0.83[EUR][1000 genomes]
rs4754010	0.85[EUR][1000 genomes]
rs4754750	0.85[EUR][1000 genomes]
rs4754754	0.81[EUR][1000 genomes]
rs55837513	0.95[AFR][1000 genomes]
rs55997858	0.92[AFR][1000 genomes]
rs57177149	0.84[EUR][1000 genomes]
rs58151663	0.84[EUR][1000 genomes]
rs6590848	0.85[EUR][1000 genomes]
rs6590849	0.85[EUR][1000 genomes]
rs6590850	0.85[EUR][1000 genomes]
rs6590854	0.98[EUR][1000 genomes]
rs6590855	0.94[EUR][1000 genomes]
rs6590857	0.90[AFR][1000 genomes]
rs6590858	0.90[AFR][1000 genomes]
rs66975288	0.96[EUR][1000 genomes]
rs7108099	0.94[EUR][1000 genomes]
rs7114691	0.90[AFR][1000 genomes]
rs7121801	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7125623	0.92[AFR][1000 genomes]
rs71462684	0.95[ASN][1000 genomes]
rs72980010	0.83[EUR][1000 genomes]
rs72980011	0.84[EUR][1000 genomes]
rs72982215	0.92[AFR][1000 genomes]
rs72982219	0.85[AFR][1000 genomes]
rs72982223	0.85[AFR][1000 genomes]
rs72982232	0.94[AFR][1000 genomes]
rs72982238	0.88[AFR][1000 genomes]
rs72982262	0.93[AFR][1000 genomes]
rs744021	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7481005	0.84[EUR][1000 genomes]
rs7924880	0.84[EUR][1000 genomes]
rs7924990	0.84[EUR][1000 genomes]
rs7925121	0.84[EUR][1000 genomes]
rs7925790	0.85[EUR][1000 genomes]
rs7926811	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7928176	0.84[EUR][1000 genomes]
rs7928303	0.84[EUR][1000 genomes]
rs7933788	0.85[AFR][1000 genomes]
rs7935424	0.92[AFR][1000 genomes]
rs7938675	0.92[AFR][1000 genomes]
rs7938688	0.96[EUR][1000 genomes]
rs7938729	0.89[AFR][1000 genomes]
rs7939471	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7940365	0.85[EUR][1000 genomes]
rs7940483	0.85[EUR][1000 genomes]
rs7940538	0.94[AFR][1000 genomes]
rs7948589	0.96[EUR][1000 genomes]
rs7949411	0.91[AFR][1000 genomes]
rs9734043	0.81[EUR][1000 genomes]
rs9787788	0.82[EUR][1000 genomes]
rs9795186	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2435045	chr11:101297975-101299670	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101283600-101299800	Weak transcription	Ovary	ovary
2	chr11:101298200-101300000	Weak transcription	Fetal Lung	lung
3	chr11:101298400-101298600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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