Variant report

Variant	rs11224759
Chromosome Location	chr11:101298720-101298721
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101296877..101299041-chr11:101301262..101303756,2	MCF-7	breast:
2	chr11:101274863..101277207-chr11:101298485..101301101,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10458946	0.99[ASN][1000 genomes]
rs11224726	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11224743	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224745	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11224747	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224749	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11224750	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224752	0.99[ASN][1000 genomes]
rs11224753	0.99[ASN][1000 genomes]
rs11224754	0.99[ASN][1000 genomes]
rs11224755	0.99[ASN][1000 genomes]
rs11224756	0.99[ASN][1000 genomes]
rs11224758	0.99[ASN][1000 genomes]
rs11224760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11534488	0.84[ASN][1000 genomes]
rs12221599	0.94[EUR][1000 genomes]
rs12222760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12225785	0.94[EUR][1000 genomes]
rs12226619	0.87[EUR][1000 genomes]
rs12226883	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12785425	0.87[EUR][1000 genomes]
rs12786491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12788470	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12789079	0.87[EUR][1000 genomes]
rs12790277	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12790740	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12794328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794587	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12794694	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12795350	0.97[ASN][1000 genomes]
rs12795968	0.99[ASN][1000 genomes]
rs12796333	0.99[ASN][1000 genomes]
rs12796675	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12797620	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12797860	0.87[EUR][1000 genomes]
rs12798288	0.99[ASN][1000 genomes]
rs12798887	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12800455	1.00[EUR][1000 genomes]
rs12802904	0.99[ASN][1000 genomes]
rs12803364	0.89[EUR][1000 genomes]
rs12803560	0.99[ASN][1000 genomes]
rs12803803	0.99[ASN][1000 genomes]
rs12803811	0.99[ASN][1000 genomes]
rs12805525	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12805898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1938988	0.94[EUR][1000 genomes]
rs1938991	0.94[ASN][1000 genomes]
rs1939001	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35452558	0.99[ASN][1000 genomes]
rs35508193	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4520564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7121801	0.90[ASN][1000 genomes]
rs71462683	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71462684	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs744021	0.94[ASN][1000 genomes]
rs7926811	0.97[ASN][1000 genomes]
rs7939471	0.92[ASN][1000 genomes]
rs9633973	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9633974	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9633975	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2435045	chr11:101297975-101299670	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101283600-101299800	Weak transcription	Ovary	ovary
2	chr11:101298200-101300000	Weak transcription	Fetal Lung	lung
3	chr11:101298600-101298800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
4	chr11:101298600-101298800	Enhancers	Osteobl	bone

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