Variant report

Variant	rs12785425
Chromosome Location	chr11:101278354-101278355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101273217..101274799-chr11:101277043..101279402,2	MCF-7	breast:
2	chr11:101277237..101279246-chr11:101300054..101301619,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10895107	0.98[ASN][1000 genomes]
rs11224726	1.00[CEU][hapmap]
rs11224743	0.83[EUR][1000 genomes]
rs11224747	0.83[EUR][1000 genomes]
rs11224749	0.81[EUR][1000 genomes]
rs11224750	0.83[EUR][1000 genomes]
rs11224759	0.87[EUR][1000 genomes]
rs11224760	0.87[EUR][1000 genomes]
rs11532049	0.94[ASN][1000 genomes]
rs12221599	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12222760	0.87[EUR][1000 genomes]
rs12225785	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12226619	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12226883	0.87[EUR][1000 genomes]
rs12786491	0.87[EUR][1000 genomes]
rs12788470	1.00[CEU][hapmap]
rs12789079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12790277	0.83[EUR][1000 genomes]
rs12794328	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs12794694	0.83[EUR][1000 genomes]
rs12796675	0.83[EUR][1000 genomes]
rs12797620	0.83[EUR][1000 genomes]
rs12797860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12798689	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12798887	0.83[EUR][1000 genomes]
rs12800455	0.87[EUR][1000 genomes]
rs12803364	1.00[CEU][hapmap]
rs12805525	0.83[EUR][1000 genomes]
rs12805898	0.87[EUR][1000 genomes]
rs12807799	0.86[EUR][1000 genomes]
rs1938988	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1938989	0.98[ASN][1000 genomes]
rs1938990	0.98[ASN][1000 genomes]
rs1939001	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs34681694	0.94[ASN][1000 genomes]
rs35508193	0.82[EUR][1000 genomes]
rs4520564	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs61163146	0.95[AFR][1000 genomes]
rs6590854	0.96[ASN][1000 genomes]
rs6590855	0.98[ASN][1000 genomes]
rs7108099	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs71462684	0.83[EUR][1000 genomes]
rs9633973	0.83[EUR][1000 genomes]
rs9633974	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101276800-101280000	Enhancers	Rectal Smooth Muscle	rectum
2	chr11:101277000-101278600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:101277800-101278600	Active TSS	Colon Smooth Muscle	Colon
4	chr11:101278000-101278400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:101278000-101278400	Enhancers	Adipose Nuclei	Adipose
6	chr11:101278000-101278600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:101278000-101278600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:101278000-101279200	Enhancers	NHDF-Ad	bronchial
9	chr11:101278200-101278600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:101278200-101278600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:101278200-101278600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr11:101278200-101278600	Active TSS	Ovary	ovary

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