Variant report

Variant	rs12222760
Chromosome Location	chr11:101284459-101284460
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10458946	0.97[ASN][1000 genomes]
rs11224695	1.00[YRI][hapmap]
rs11224726	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11224743	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224745	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11224747	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224749	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11224750	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224752	0.97[ASN][1000 genomes]
rs11224753	0.97[ASN][1000 genomes]
rs11224754	0.97[ASN][1000 genomes]
rs11224755	0.97[ASN][1000 genomes]
rs11224756	0.97[ASN][1000 genomes]
rs11224758	0.97[ASN][1000 genomes]
rs11224759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11224760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11224765	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11224772	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11224773	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11534488	0.85[ASN][1000 genomes]
rs1218919	0.82[MEX][hapmap];1.00[MKK][hapmap]
rs1218927	0.82[MEX][hapmap];1.00[MKK][hapmap]
rs12221599	0.94[EUR][1000 genomes]
rs12225785	0.94[EUR][1000 genomes]
rs12226619	0.87[EUR][1000 genomes]
rs12226883	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12785425	0.87[EUR][1000 genomes]
rs12786491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12788461	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs12788470	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12789079	0.87[EUR][1000 genomes]
rs12790277	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12790740	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12794328	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12794587	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12794694	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12795350	0.97[ASN][1000 genomes]
rs12795968	0.97[ASN][1000 genomes]
rs12796333	0.97[ASN][1000 genomes]
rs12796675	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12797620	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12797860	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs12798288	0.97[ASN][1000 genomes]
rs12798689	0.82[CHB][hapmap]
rs12798887	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12800455	1.00[EUR][1000 genomes]
rs12802904	0.97[ASN][1000 genomes]
rs12803364	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12803560	0.97[ASN][1000 genomes]
rs12803803	0.97[ASN][1000 genomes]
rs12803811	0.97[ASN][1000 genomes]
rs12805525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12805898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12807799	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1938988	0.94[EUR][1000 genomes]
rs1938991	0.95[ASN][1000 genomes]
rs1938994	0.84[JPT][hapmap]
rs1939001	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35452558	0.97[ASN][1000 genomes]
rs35508193	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4520564	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7108099	0.82[CHB][hapmap]
rs7121801	0.94[ASN][1000 genomes]
rs71462683	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71462684	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs744021	0.95[ASN][1000 genomes]
rs7926811	0.95[ASN][1000 genomes]
rs7939471	0.92[ASN][1000 genomes]
rs9633973	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9633974	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9633975	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101283600-101299800	Weak transcription	Ovary	ovary

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