Variant report

Variant	rs11534488
Chromosome Location	chr11:101289513-101289514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10458946	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224748	0.80[EUR][1000 genomes]
rs11224752	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224753	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224754	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224755	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224756	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224758	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224759	0.84[ASN][1000 genomes]
rs11224760	0.85[ASN][1000 genomes]
rs12222760	0.85[ASN][1000 genomes]
rs12226883	0.83[ASN][1000 genomes]
rs12786491	0.83[ASN][1000 genomes]
rs12790277	0.85[ASN][1000 genomes]
rs12794328	0.84[ASN][1000 genomes]
rs12794587	0.83[ASN][1000 genomes]
rs12795350	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12795968	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12796333	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12798288	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12802904	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12803560	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12803803	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12803811	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12805525	0.85[ASN][1000 genomes]
rs12805898	0.84[ASN][1000 genomes]
rs1938987	0.80[EUR][1000 genomes]
rs1938991	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2508359	0.80[EUR][1000 genomes]
rs2508360	0.80[EUR][1000 genomes]
rs2508362	0.80[EUR][1000 genomes]
rs2508365	0.82[EUR][1000 genomes]
rs2508366	0.82[EUR][1000 genomes]
rs2508367	0.82[EUR][1000 genomes]
rs2508369	0.82[EUR][1000 genomes]
rs2508371	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2508372	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2508375	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2513146	0.80[EUR][1000 genomes]
rs2513149	0.80[EUR][1000 genomes]
rs2513150	0.80[EUR][1000 genomes]
rs2513168	0.82[EUR][1000 genomes]
rs2513169	0.82[EUR][1000 genomes]
rs2513170	0.82[EUR][1000 genomes]
rs2513172	0.80[EUR][1000 genomes]
rs2513174	0.82[EUR][1000 genomes]
rs2513175	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2513176	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3018696	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35180268	0.81[EUR][1000 genomes]
rs35452558	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4520564	0.83[ASN][1000 genomes]
rs55837513	0.87[AFR][1000 genomes]
rs55997858	0.86[AFR][1000 genomes]
rs6590854	0.82[EUR][1000 genomes]
rs6590857	0.84[AFR][1000 genomes]
rs6590858	0.84[AFR][1000 genomes]
rs66975288	0.80[EUR][1000 genomes]
rs7114691	0.80[AFR][1000 genomes]
rs7121801	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7125623	0.86[AFR][1000 genomes]
rs71462684	0.83[ASN][1000 genomes]
rs72982215	0.86[AFR][1000 genomes]
rs72982232	0.88[AFR][1000 genomes]
rs72982238	0.82[AFR][1000 genomes]
rs72982262	0.85[AFR][1000 genomes]
rs744021	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7926811	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7935424	0.86[AFR][1000 genomes]
rs7938675	0.86[AFR][1000 genomes]
rs7938688	0.80[EUR][1000 genomes]
rs7938729	0.83[AFR][1000 genomes]
rs7939471	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7940538	0.88[AFR][1000 genomes]
rs7948589	0.80[EUR][1000 genomes]
rs7949411	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101283600-101299800	Weak transcription	Ovary	ovary

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