Variant report

Variant	rs55837513
Chromosome Location	chr11:101299293-101299294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101274863..101277207-chr11:101298485..101301101,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10458946	0.95[AFR][1000 genomes]
rs11224752	0.94[AFR][1000 genomes]
rs11224753	0.95[AFR][1000 genomes]
rs11224754	0.95[AFR][1000 genomes]
rs11224755	0.95[AFR][1000 genomes]
rs11224756	0.95[AFR][1000 genomes]
rs11224758	0.95[AFR][1000 genomes]
rs11534488	0.87[AFR][1000 genomes]
rs11822280	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11824770	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12795350	0.84[AFR][1000 genomes]
rs12795968	0.95[AFR][1000 genomes]
rs12796333	0.95[AFR][1000 genomes]
rs12798288	0.95[AFR][1000 genomes]
rs12802904	0.95[AFR][1000 genomes]
rs12803560	0.95[AFR][1000 genomes]
rs12803803	0.94[AFR][1000 genomes]
rs12803811	0.95[AFR][1000 genomes]
rs17096639	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17096649	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1938991	0.92[AFR][1000 genomes]
rs2508355	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2508356	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2508361	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2508363	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2508364	0.97[EUR][1000 genomes]
rs2508370	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2508373	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2508376	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2513143	0.94[EUR][1000 genomes]
rs2513144	0.98[EUR][1000 genomes]
rs2513145	0.98[EUR][1000 genomes]
rs2513147	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2513148	0.94[EUR][1000 genomes]
rs2513171	0.97[EUR][1000 genomes]
rs2513173	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3016234	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3016235	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35452558	0.95[AFR][1000 genomes]
rs4754759	1.00[EUR][1000 genomes]
rs4754760	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55997858	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56229466	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56284719	0.82[EUR][1000 genomes]
rs56334567	0.91[EUR][1000 genomes]
rs56380147	0.87[EUR][1000 genomes]
rs6590851	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6590852	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6590857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6590858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7114691	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7115209	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7120480	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7125623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72980031	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72980041	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72980076	0.92[EUR][1000 genomes]
rs72982215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72982217	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72982219	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72982223	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72982226	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72982232	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72982238	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72982262	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72982273	0.89[AMR][1000 genomes]
rs744021	0.92[AFR][1000 genomes]
rs7926811	0.89[AFR][1000 genomes]
rs7928020	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7933788	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7935424	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7938675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7938729	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7940538	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949411	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2435045	chr11:101297975-101299670	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101283600-101299800	Weak transcription	Ovary	ovary
2	chr11:101298200-101300000	Weak transcription	Fetal Lung	lung
3	chr11:101299000-101300000	Weak transcription	Rectal Smooth Muscle	rectum

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