Variant report

Variant	rs2513143
Chromosome Location	chr11:101261237-101261238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10791460	0.87[AFR][1000 genomes]
rs10791461	0.88[AFR][1000 genomes]
rs11224748	0.85[AFR][1000 genomes]
rs11224813	1.00[CHB][hapmap]
rs11822280	0.91[EUR][1000 genomes]
rs11822293	0.83[ASN][1000 genomes]
rs11824770	0.95[EUR][1000 genomes]
rs12362396	0.94[ASN][1000 genomes]
rs17096639	0.98[EUR][1000 genomes]
rs17096649	0.94[EUR][1000 genomes]
rs1938972	0.88[AFR][1000 genomes]
rs1938987	0.87[AFR][1000 genomes]
rs2508354	0.87[AFR][1000 genomes]
rs2508355	0.98[EUR][1000 genomes]
rs2508356	0.98[EUR][1000 genomes]
rs2508357	0.88[AFR][1000 genomes]
rs2508358	0.87[AFR][1000 genomes]
rs2508359	0.87[AFR][1000 genomes]
rs2508360	0.87[AFR][1000 genomes]
rs2508361	0.94[EUR][1000 genomes]
rs2508362	0.85[AFR][1000 genomes]
rs2508363	0.99[EUR][1000 genomes]
rs2508364	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2508365	0.96[AFR][1000 genomes]
rs2508366	0.95[AFR][1000 genomes]
rs2508367	0.80[AFR][1000 genomes]
rs2508368	0.94[AFR][1000 genomes]
rs2508369	0.83[AFR][1000 genomes]
rs2508370	0.91[EUR][1000 genomes]
rs2508373	0.94[EUR][1000 genomes]
rs2508374	0.82[AFR][1000 genomes]
rs2508376	0.98[EUR][1000 genomes]
rs2513144	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2513145	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2513147	1.00[EUR][1000 genomes]
rs2513148	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2513149	0.87[AFR][1000 genomes]
rs2513150	0.88[AFR][1000 genomes]
rs2513151	0.88[AFR][1000 genomes]
rs2513152	0.88[AFR][1000 genomes]
rs2513153	0.88[AFR][1000 genomes]
rs2513154	0.88[AFR][1000 genomes]
rs2513168	0.85[AFR][1000 genomes]
rs2513169	0.95[AFR][1000 genomes]
rs2513170	0.96[AFR][1000 genomes]
rs2513171	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2513172	0.94[AFR][1000 genomes]
rs2513173	0.98[EUR][1000 genomes]
rs3016234	1.00[EUR][1000 genomes]
rs3016235	0.98[EUR][1000 genomes]
rs3016236	0.87[AFR][1000 genomes]
rs4754759	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4754760	0.98[EUR][1000 genomes]
rs55837513	0.94[EUR][1000 genomes]
rs55997858	0.98[EUR][1000 genomes]
rs56229466	0.98[EUR][1000 genomes]
rs56284719	0.85[EUR][1000 genomes]
rs56334567	0.94[EUR][1000 genomes]
rs56380147	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6590851	0.93[EUR][1000 genomes]
rs6590852	0.96[EUR][1000 genomes]
rs6590857	0.88[CEU][hapmap];0.98[EUR][1000 genomes]
rs6590858	0.88[CEU][hapmap];0.98[EUR][1000 genomes]
rs66975288	0.81[AFR][1000 genomes]
rs7114691	0.98[EUR][1000 genomes]
rs7115209	0.98[EUR][1000 genomes]
rs7120480	0.98[EUR][1000 genomes]
rs7125623	0.98[EUR][1000 genomes]
rs72980031	0.92[EUR][1000 genomes]
rs72980041	0.95[EUR][1000 genomes]
rs72980076	0.98[EUR][1000 genomes]
rs72982215	0.98[EUR][1000 genomes]
rs72982217	0.94[EUR][1000 genomes]
rs72982219	0.94[EUR][1000 genomes]
rs72982223	0.94[EUR][1000 genomes]
rs72982226	0.94[EUR][1000 genomes]
rs72982232	0.94[EUR][1000 genomes]
rs72982238	0.94[EUR][1000 genomes]
rs72982262	0.93[EUR][1000 genomes]
rs7928020	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs7933788	0.96[EUR][1000 genomes]
rs7935424	0.98[EUR][1000 genomes]
rs7938675	0.96[EUR][1000 genomes]
rs7938688	0.88[AFR][1000 genomes]
rs7938729	0.88[CEU][hapmap];0.98[EUR][1000 genomes]
rs7940538	0.94[EUR][1000 genomes]
rs7949411	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101253600-101268600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:101253600-101278200	Weak transcription	Ovary	ovary
3	chr11:101257800-101271000	Weak transcription	Left Ventricle	heart

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