Variant report

Variant	rs56334567
Chromosome Location	chr11:101209194-101209195
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101206834..101209402-chr11:101310886..101313505,3	MCF-7	breast:
2	chr11:101206973..101209603-chr11:101215324..101218804,5	MCF-7	breast:
3	chr11:101169560..101172148-chr11:101207903..101209528,2	MCF-7	breast:
4	chr11:101207064..101211213-chr11:101212680..101214368,3	MCF-7	breast:
5	chr11:101206779..101209574-chr11:101209606..101213423,7	MCF-7	breast:
6	chr11:100989945..101004314-chr11:101189639..101211497,76	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11224719	0.90[AFR][1000 genomes]
rs11822280	0.96[EUR][1000 genomes]
rs11824770	0.94[EUR][1000 genomes]
rs17096639	0.92[EUR][1000 genomes]
rs17096649	0.91[EUR][1000 genomes]
rs1938994	0.98[AFR][1000 genomes]
rs1943766	0.91[AFR][1000 genomes]
rs2508355	0.92[EUR][1000 genomes]
rs2508356	0.92[EUR][1000 genomes]
rs2508361	0.91[EUR][1000 genomes]
rs2508363	0.93[EUR][1000 genomes]
rs2508364	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2508370	0.87[EUR][1000 genomes]
rs2508373	0.91[EUR][1000 genomes]
rs2508376	0.92[EUR][1000 genomes]
rs2513143	0.94[EUR][1000 genomes]
rs2513144	0.93[EUR][1000 genomes]
rs2513145	0.93[EUR][1000 genomes]
rs2513147	0.94[EUR][1000 genomes]
rs2513148	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2513171	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2513173	0.92[EUR][1000 genomes]
rs3016234	0.94[EUR][1000 genomes]
rs3016235	0.92[EUR][1000 genomes]
rs4754759	0.91[EUR][1000 genomes]
rs4754760	0.92[EUR][1000 genomes]
rs55837513	0.91[EUR][1000 genomes]
rs55997858	0.92[EUR][1000 genomes]
rs56229466	0.92[EUR][1000 genomes]
rs56284719	0.90[EUR][1000 genomes]
rs56380147	0.83[EUR][1000 genomes]
rs6590851	0.97[EUR][1000 genomes]
rs6590852	0.90[EUR][1000 genomes]
rs6590857	0.92[EUR][1000 genomes]
rs6590858	0.92[EUR][1000 genomes]
rs7114691	0.92[EUR][1000 genomes]
rs7115209	0.92[EUR][1000 genomes]
rs7120480	0.92[EUR][1000 genomes]
rs7125623	0.92[EUR][1000 genomes]
rs72980031	0.93[EUR][1000 genomes]
rs72980041	0.94[EUR][1000 genomes]
rs72980076	0.92[EUR][1000 genomes]
rs72982215	0.92[EUR][1000 genomes]
rs72982217	0.91[EUR][1000 genomes]
rs72982219	0.91[EUR][1000 genomes]
rs72982223	0.91[EUR][1000 genomes]
rs72982226	0.91[EUR][1000 genomes]
rs72982232	0.91[EUR][1000 genomes]
rs72982238	0.91[EUR][1000 genomes]
rs72982262	0.90[EUR][1000 genomes]
rs7928020	0.83[EUR][1000 genomes]
rs7933788	0.90[EUR][1000 genomes]
rs7935424	0.92[EUR][1000 genomes]
rs7938675	0.90[EUR][1000 genomes]
rs7938729	0.92[EUR][1000 genomes]
rs7940538	0.91[EUR][1000 genomes]
rs7949411	0.87[EUR][1000 genomes]
rs9787788	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898329	chr11:101152961-101218094	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101206200-101211600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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