Variant report

Variant	rs6590852
Chromosome Location	chr11:101263382-101263383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101261268..101263471-chr11:101303237..101305024,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11822280	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11824770	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17096639	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17096649	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2508355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2508356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2508361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2508363	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2508364	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2508370	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2508373	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2508375	0.87[AFR][1000 genomes]
rs2508376	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2513143	0.96[EUR][1000 genomes]
rs2513144	0.92[EUR][1000 genomes]
rs2513145	0.92[EUR][1000 genomes]
rs2513147	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2513148	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2513171	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2513173	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3016234	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3016235	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4754759	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4754760	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55837513	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55997858	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56229466	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56284719	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56334567	0.90[EUR][1000 genomes]
rs56380147	0.88[EUR][1000 genomes]
rs6590851	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6590857	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6590858	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7114691	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7115209	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7120480	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7125623	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72980031	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72980041	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72980076	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72982215	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72982217	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72982219	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72982223	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72982226	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72982232	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72982238	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72982262	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72982273	0.89[AMR][1000 genomes]
rs7928020	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7933788	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7935424	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7938675	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7938729	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7940538	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7949411	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101253600-101268600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:101253600-101278200	Weak transcription	Ovary	ovary
3	chr11:101257800-101271000	Weak transcription	Left Ventricle	heart

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