Variant report

Variant	rs12786491
Chromosome Location	chr11:101278153-101278154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101273217..101274799-chr11:101277043..101279402,2	MCF-7	breast:
2	chr11:101277237..101279246-chr11:101300054..101301619,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10458946	0.95[ASN][1000 genomes]
rs11224726	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11224743	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11224745	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11224747	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11224749	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11224750	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11224752	0.95[ASN][1000 genomes]
rs11224753	0.95[ASN][1000 genomes]
rs11224754	0.95[ASN][1000 genomes]
rs11224755	0.95[ASN][1000 genomes]
rs11224756	0.95[ASN][1000 genomes]
rs11224758	0.95[ASN][1000 genomes]
rs11224759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11224760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11534488	0.83[ASN][1000 genomes]
rs12221599	0.94[EUR][1000 genomes]
rs12222760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12225785	0.94[EUR][1000 genomes]
rs12226619	0.87[EUR][1000 genomes]
rs12226883	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785425	0.87[EUR][1000 genomes]
rs12788470	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12789079	0.87[EUR][1000 genomes]
rs12790277	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12790740	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12794328	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12794587	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12794694	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12795350	0.96[ASN][1000 genomes]
rs12795968	0.95[ASN][1000 genomes]
rs12796333	0.95[ASN][1000 genomes]
rs12796675	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12797620	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12797860	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12798288	0.95[ASN][1000 genomes]
rs12798887	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12800455	1.00[EUR][1000 genomes]
rs12802904	0.95[ASN][1000 genomes]
rs12803364	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12803560	0.95[ASN][1000 genomes]
rs12803803	0.95[ASN][1000 genomes]
rs12803811	0.95[ASN][1000 genomes]
rs12805525	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12805898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12807799	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1938988	0.94[EUR][1000 genomes]
rs1938991	1.00[ASN][1000 genomes]
rs1939001	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2508362	0.82[ASN][1000 genomes]
rs2508365	0.82[ASN][1000 genomes]
rs2508366	0.82[ASN][1000 genomes]
rs2508367	0.82[ASN][1000 genomes]
rs2508368	0.82[ASN][1000 genomes]
rs2508369	0.82[ASN][1000 genomes]
rs2508371	0.80[ASN][1000 genomes]
rs2508372	0.82[ASN][1000 genomes]
rs2508375	0.81[ASN][1000 genomes]
rs2513169	0.82[ASN][1000 genomes]
rs2513170	0.82[ASN][1000 genomes]
rs2513172	0.82[ASN][1000 genomes]
rs2513175	0.82[ASN][1000 genomes]
rs2513176	0.81[ASN][1000 genomes]
rs3018696	0.81[ASN][1000 genomes]
rs35452558	0.95[ASN][1000 genomes]
rs35508193	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4520564	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7121801	0.96[ASN][1000 genomes]
rs71462683	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71462684	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs744021	1.00[ASN][1000 genomes]
rs7926811	0.93[ASN][1000 genomes]
rs7939471	0.97[ASN][1000 genomes]
rs9633973	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9633974	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9633975	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101253600-101278200	Weak transcription	Ovary	ovary
2	chr11:101276800-101280000	Enhancers	Rectal Smooth Muscle	rectum
3	chr11:101277000-101278600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:101277800-101278200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:101277800-101278600	Active TSS	Colon Smooth Muscle	Colon
6	chr11:101278000-101278200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:101278000-101278400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:101278000-101278400	Enhancers	Adipose Nuclei	Adipose
9	chr11:101278000-101278600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:101278000-101278600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:101278000-101279200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links