Variant report

Variant	rs12790740
Chromosome Location	chr11:101217386-101217387
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:101206973..101209603-chr11:101215324..101218804,5	MCF-7	breast:
2	chr11:100900831..100903332-chr11:101215245..101217524,2	MCF-7	breast:
3	chr11:101214168..101217557-chr11:101302222..101305735,3	MCF-7	breast:
4	chr11:101204850..101206568-chr11:101216370..101218964,2	MCF-7	breast:
5	chr11:100997445..101001365-chr11:101215076..101220609,8	MCF-7	breast:
6	chr11:101211140..101214138-chr11:101214297..101218139,4	MCF-7	breast:
7	chr11:101216604..101219529-chr11:101221127..101223365,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11224726	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11224743	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11224745	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224747	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11224748	0.83[ASN][1000 genomes]
rs11224749	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11224750	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11224759	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11224760	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12221599	0.85[EUR][1000 genomes]
rs12222760	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12225785	0.85[EUR][1000 genomes]
rs12226883	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12786491	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12788470	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790277	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12794328	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12794587	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12794694	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12796675	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12797620	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12797860	0.82[CEU][hapmap]
rs12798887	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12800455	0.85[EUR][1000 genomes]
rs12803364	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12805525	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12805898	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12807799	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1938988	0.88[EUR][1000 genomes]
rs1938994	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1939001	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508362	0.86[ASN][1000 genomes]
rs2508365	0.86[ASN][1000 genomes]
rs2508366	0.86[ASN][1000 genomes]
rs2508367	0.86[ASN][1000 genomes]
rs2508368	0.86[ASN][1000 genomes]
rs2508369	0.86[ASN][1000 genomes]
rs2508371	0.85[ASN][1000 genomes]
rs2508372	0.86[ASN][1000 genomes]
rs2508375	0.87[ASN][1000 genomes]
rs2513169	0.86[ASN][1000 genomes]
rs2513170	0.86[ASN][1000 genomes]
rs2513172	0.86[ASN][1000 genomes]
rs2513175	0.86[ASN][1000 genomes]
rs2513176	0.85[ASN][1000 genomes]
rs3018696	0.87[ASN][1000 genomes]
rs35508193	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4520564	0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71462683	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71462684	0.81[EUR][1000 genomes]
rs9633973	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9633974	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9633975	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898329	chr11:101152961-101218094	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101215000-101218200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:101216800-101217800	Enhancers	NHLF	lung
3	chr11:101216800-101218200	Enhancers	Ovary	ovary
4	chr11:101216800-101218200	Enhancers	NHDF-Ad	bronchial
5	chr11:101217000-101217800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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