Variant report

Variant	rs12797860
Chromosome Location	chr11:101301419-101301420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:101296877..101299041-chr11:101301262..101303756,2	MCF-7	breast:
2	chr11:101299826..101304335-chr11:101307356..101314246,9	MCF-7	breast:
3	chr11:100997015..100999242-chr11:101300083..101302474,2	MCF-7	breast:
4	chr11:100992008..101001878-chr11:101300412..101311512,29	MCF-7	breast:
5	chr11:101299708..101303554-chr11:101304150..101306716,3	MCF-7	breast:
6	chr11:101222724..101225146-chr11:101299746..101301681,2	MCF-7	breast:
7	chr11:101277237..101279246-chr11:101300054..101301619,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10895107	0.95[ASN][1000 genomes]
rs11224726	1.00[CEU][hapmap]
rs11224743	0.83[EUR][1000 genomes]
rs11224747	0.83[EUR][1000 genomes]
rs11224749	0.81[EUR][1000 genomes]
rs11224750	0.83[EUR][1000 genomes]
rs11224759	0.87[EUR][1000 genomes]
rs11224760	0.87[EUR][1000 genomes]
rs11532049	0.99[ASN][1000 genomes]
rs12221599	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12222760	0.87[EUR][1000 genomes]
rs12225785	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12226619	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12226883	0.87[EUR][1000 genomes]
rs12785425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12786491	0.87[EUR][1000 genomes]
rs12788470	1.00[CEU][hapmap]
rs12789079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12790277	0.83[EUR][1000 genomes]
rs12790740	0.82[CEU][hapmap]
rs12794328	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes]
rs12794694	0.83[EUR][1000 genomes]
rs12796675	0.83[EUR][1000 genomes]
rs12797620	0.83[EUR][1000 genomes]
rs12798689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12798887	0.83[EUR][1000 genomes]
rs12800455	0.87[EUR][1000 genomes]
rs12803364	1.00[CEU][hapmap]
rs12805525	0.83[EUR][1000 genomes]
rs12805898	0.87[EUR][1000 genomes]
rs12807799	0.86[EUR][1000 genomes]
rs1938988	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1938989	0.95[ASN][1000 genomes]
rs1938990	0.95[ASN][1000 genomes]
rs1939001	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs34681694	0.99[ASN][1000 genomes]
rs35508193	0.82[EUR][1000 genomes]
rs4520564	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs61163146	0.95[AFR][1000 genomes]
rs6590854	0.92[ASN][1000 genomes]
rs6590855	0.95[ASN][1000 genomes]
rs7108099	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs71462684	0.83[EUR][1000 genomes]
rs9633973	0.83[EUR][1000 genomes]
rs9633974	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101299800-101301600	Enhancers	Fetal Brain Male	brain
2	chr11:101299800-101301800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:101299800-101302000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:101299800-101303200	Enhancers	Placenta	Placenta
5	chr11:101299800-101304000	Enhancers	Ovary	ovary
6	chr11:101300000-101301600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:101300000-101302000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:101300000-101302000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:101300000-101302200	Enhancers	Rectal Smooth Muscle	rectum
10	chr11:101300000-101307600	Enhancers	Fetal Lung	lung
11	chr11:101300200-101302000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr11:101300400-101301600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:101300600-101302000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:101300800-101302000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:101300800-101302000	Enhancers	Fetal Stomach	stomach
16	chr11:101301000-101302000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:101301000-101302000	Enhancers	NHLF	lung
18	chr11:101301000-101303600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:101301200-101302000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr11:101301200-101302000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr11:101301200-101302600	Weak transcription	Stomach Mucosa	stomach
22	chr11:101301200-101306200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:101301400-101302000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr11:101301400-101302000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr11:101301400-101302000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr11:101301400-101302000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:101301400-101302200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:101301400-101302200	Enhancers	Colon Smooth Muscle	Colon
29	chr11:101301400-101302200	Enhancers	HMEC	breast
30	chr11:101301400-101302200	Enhancers	NHEK	skin

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