Variant report

Variant	rs1938989
Chromosome Location	chr11:101277069-101277070
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101273217..101274799-chr11:101277043..101279402,2	MCF-7	breast:
2	chr11:101274863..101277207-chr11:101298485..101301101,2	MCF-7	breast:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10458946	0.92[EUR][1000 genomes]
rs10791460	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10791461	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10895107	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224728	0.82[EUR][1000 genomes]
rs11224729	0.82[EUR][1000 genomes]
rs11224748	0.91[EUR][1000 genomes]
rs11224752	0.92[EUR][1000 genomes]
rs11224753	0.92[EUR][1000 genomes]
rs11224754	0.92[EUR][1000 genomes]
rs11224755	0.92[EUR][1000 genomes]
rs11224756	0.92[EUR][1000 genomes]
rs11224758	0.92[EUR][1000 genomes]
rs11532049	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12221599	0.97[ASN][1000 genomes]
rs12223715	0.80[EUR][1000 genomes]
rs12225785	0.95[ASN][1000 genomes]
rs12226605	0.80[EUR][1000 genomes]
rs12226619	0.95[ASN][1000 genomes]
rs12785425	0.98[ASN][1000 genomes]
rs12789079	1.00[ASN][1000 genomes]
rs12790159	0.80[EUR][1000 genomes]
rs12791134	0.81[AMR][1000 genomes]
rs12794328	0.84[CHB][hapmap]
rs12795350	0.82[EUR][1000 genomes]
rs12795968	0.92[EUR][1000 genomes]
rs12796333	0.92[EUR][1000 genomes]
rs12797860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12798288	0.92[EUR][1000 genomes]
rs12798689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12802904	0.92[EUR][1000 genomes]
rs12803560	0.92[EUR][1000 genomes]
rs12803803	0.92[EUR][1000 genomes]
rs12803811	0.92[EUR][1000 genomes]
rs12804031	0.80[EUR][1000 genomes]
rs1938972	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1938978	0.80[EUR][1000 genomes]
rs1938979	0.80[EUR][1000 genomes]
rs1938980	0.80[EUR][1000 genomes]
rs1938987	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1938990	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938991	0.92[EUR][1000 genomes]
rs1938994	0.86[EUR][1000 genomes]
rs1943766	0.80[EUR][1000 genomes]
rs1943768	0.80[EUR][1000 genomes]
rs2508354	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2508357	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2508358	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2508359	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2508360	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2508362	0.91[EUR][1000 genomes]
rs2508365	0.93[EUR][1000 genomes]
rs2508366	0.93[EUR][1000 genomes]
rs2508367	0.93[EUR][1000 genomes]
rs2508368	0.87[EUR][1000 genomes]
rs2508369	0.93[EUR][1000 genomes]
rs2508371	0.93[EUR][1000 genomes]
rs2508372	0.92[EUR][1000 genomes]
rs2508375	0.93[EUR][1000 genomes]
rs2513146	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2513149	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2513150	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2513151	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2513152	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2513153	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2513154	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2513168	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2513169	0.93[EUR][1000 genomes]
rs2513170	0.93[EUR][1000 genomes]
rs2513172	0.91[EUR][1000 genomes]
rs2513174	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2513175	0.93[EUR][1000 genomes]
rs2513176	0.93[EUR][1000 genomes]
rs2513178	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3016236	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3018696	0.93[EUR][1000 genomes]
rs3018699	0.85[AMR][1000 genomes]
rs34681694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35180268	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35452558	0.92[EUR][1000 genomes]
rs4520564	0.82[CHB][hapmap]
rs4754010	0.80[EUR][1000 genomes]
rs4754750	0.80[EUR][1000 genomes]
rs56380147	0.95[AFR][1000 genomes]
rs6590848	0.80[EUR][1000 genomes]
rs6590849	0.80[EUR][1000 genomes]
rs6590850	0.80[EUR][1000 genomes]
rs6590854	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6590855	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66975288	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7108099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7121801	0.93[EUR][1000 genomes]
rs744021	0.92[EUR][1000 genomes]
rs7925790	0.80[EUR][1000 genomes]
rs7926811	0.90[EUR][1000 genomes]
rs7938688	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7939471	0.92[EUR][1000 genomes]
rs7940365	0.80[EUR][1000 genomes]
rs7940483	0.80[EUR][1000 genomes]
rs7948589	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9795186	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv468851	chr11:101268447-101330807	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv556132	chr11:101268447-101330807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3405421	chr11:101275217-101277540	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3405526	chr11:101275692-101277190	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101253600-101278200	Weak transcription	Ovary	ovary
2	chr11:101276800-101277600	Enhancers	Colon Smooth Muscle	Colon
3	chr11:101276800-101280000	Enhancers	Rectal Smooth Muscle	rectum
4	chr11:101277000-101278000	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr11:101277000-101278600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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