Variant report

Variant	rs974268
Chromosome Location	chr4:125706458-125706459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10034605	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2135479	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2174623	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4000844	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4321650	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6816273	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6823943	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6838625	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661684	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7674739	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7695600	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307548	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9884327	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs993705	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437423	chr4:125705944-125707773	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125706400-125707800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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