Variant report

Variant	rs993705
Chromosome Location	chr4:125712074-125712075
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10034605	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2135479	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2174623	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4000844	0.82[EUR][1000 genomes]
rs4321650	0.82[EUR][1000 genomes]
rs6816273	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6823943	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6838625	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7661684	0.81[EUR][1000 genomes]
rs7674739	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7695600	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9307548	0.82[EUR][1000 genomes]
rs974268	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9884327	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125712000-125712400	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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