Variant report

Variant	rs9753924
Chromosome Location	chr21:37961315-37961316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:37851104..37852604-chr21:37960224..37961803,2	MCF-7	breast:
2	chr21:37790642..37792475-chr21:37961293..37963642,2	K562	blood:
3	chr21:37960058..37963190-chr21:37967136..37970728,3	K562	blood:

Variant related genes	Relation type
ENSG00000159261	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1023150	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1023368	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11088359	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1571698	0.82[ASN][1000 genomes]
rs2835396	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2835403	0.82[ASN][1000 genomes]
rs364698	0.93[ASN][1000 genomes]
rs364846	0.93[ASN][1000 genomes]
rs364916	0.92[ASN][1000 genomes]
rs365416	0.93[ASN][1000 genomes]
rs366381	0.93[ASN][1000 genomes]
rs367166	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs371189	0.94[ASN][1000 genomes]
rs371945	0.95[ASN][1000 genomes]
rs372213	0.95[ASN][1000 genomes]
rs375572	0.93[ASN][1000 genomes]
rs375662	0.93[ASN][1000 genomes]
rs376218	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs376590	0.93[ASN][1000 genomes]
rs377160	0.94[ASN][1000 genomes]
rs377284	0.95[ASN][1000 genomes]
rs377527	0.94[ASN][1000 genomes]
rs377574	0.94[ASN][1000 genomes]
rs382635	0.95[ASN][1000 genomes]
rs382937	0.95[ASN][1000 genomes]
rs383609	0.95[ASN][1000 genomes]
rs387842	0.94[ASN][1000 genomes]
rs390432	0.92[ASN][1000 genomes]
rs393851	0.95[ASN][1000 genomes]
rs394087	0.95[ASN][1000 genomes]
rs394110	0.95[ASN][1000 genomes]
rs394211	0.95[ASN][1000 genomes]
rs394565	0.95[ASN][1000 genomes]
rs395383	0.95[ASN][1000 genomes]
rs397691	0.91[ASN][1000 genomes]
rs397990	0.95[ASN][1000 genomes]
rs397996	0.95[ASN][1000 genomes]
rs398591	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs399522	0.95[ASN][1000 genomes]
rs399711	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs400019	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs400267	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs400544	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs404515	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs405901	0.95[ASN][1000 genomes]
rs407095	0.95[ASN][1000 genomes]
rs409231	0.95[ASN][1000 genomes]
rs412775	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs413616	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs413852	0.95[ASN][1000 genomes]
rs414911	0.94[ASN][1000 genomes]
rs415100	0.94[ASN][1000 genomes]
rs415124	0.94[ASN][1000 genomes]
rs415848	0.95[ASN][1000 genomes]
rs416108	0.95[ASN][1000 genomes]
rs416875	0.92[ASN][1000 genomes]
rs417173	0.94[ASN][1000 genomes]
rs417191	0.92[ASN][1000 genomes]
rs419941	0.95[ASN][1000 genomes]
rs420925	0.95[ASN][1000 genomes]
rs425864	0.95[ASN][1000 genomes]
rs428948	0.95[ASN][1000 genomes]
rs429326	0.95[ASN][1000 genomes]
rs431530	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs439888	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs440551	0.94[ASN][1000 genomes]
rs441734	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs443968	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs445103	0.95[ASN][1000 genomes]
rs447759	0.92[ASN][1000 genomes]
rs448014	0.94[ASN][1000 genomes]
rs448332	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs448482	0.95[ASN][1000 genomes]
rs448659	0.95[ASN][1000 genomes]
rs448687	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs448849	0.95[ASN][1000 genomes]
rs449547	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs450183	0.95[ASN][1000 genomes]
rs451163	0.94[ASN][1000 genomes]
rs451243	0.94[ASN][1000 genomes]
rs451370	0.95[ASN][1000 genomes]
rs451614	0.95[ASN][1000 genomes]
rs452072	0.90[ASN][1000 genomes]
rs452081	0.92[ASN][1000 genomes]
rs452107	0.95[ASN][1000 genomes]
rs452128	0.92[ASN][1000 genomes]
rs452583	0.95[ASN][1000 genomes]
rs453539	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs928839	0.83[EUR][1000 genomes]
rs97959	0.92[ASN][1000 genomes]
rs9978422	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37955400-37965400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:37960200-37961400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr21:37960400-37963000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr21:37961200-37961600	Enhancers	Pancreas	Pancrea
5	chr21:37961200-37962000	Enhancers	Fetal Muscle Trunk	muscle
6	chr21:37961200-37962000	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr21:37961200-37962600	Enhancers	Fetal Lung	lung

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