Variant report

Variant	rs11088359
Chromosome Location	chr21:37978316-37978317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37975190..37976872-chr21:37977276..37978822,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1023150	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1023368	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13047867	0.85[ASN][1000 genomes]
rs1571698	0.89[ASN][1000 genomes]
rs1888463	0.85[ASN][1000 genomes]
rs2734398	0.83[ASN][1000 genomes]
rs2734399	0.84[ASN][1000 genomes]
rs2835396	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2835403	0.89[ASN][1000 genomes]
rs2845771	0.81[ASN][1000 genomes]
rs364698	0.83[ASN][1000 genomes]
rs364846	0.83[ASN][1000 genomes]
rs364916	0.83[ASN][1000 genomes]
rs365416	0.83[ASN][1000 genomes]
rs366381	0.83[ASN][1000 genomes]
rs367166	0.88[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs371189	0.85[ASN][1000 genomes]
rs371945	0.86[ASN][1000 genomes]
rs372213	0.86[ASN][1000 genomes]
rs375572	0.83[ASN][1000 genomes]
rs375662	0.83[ASN][1000 genomes]
rs376218	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs376590	0.83[ASN][1000 genomes]
rs377160	0.84[ASN][1000 genomes]
rs377284	0.86[ASN][1000 genomes]
rs377527	0.84[ASN][1000 genomes]
rs377574	0.84[ASN][1000 genomes]
rs382635	0.86[ASN][1000 genomes]
rs382937	0.86[ASN][1000 genomes]
rs383609	0.86[ASN][1000 genomes]
rs387842	0.84[ASN][1000 genomes]
rs390432	0.83[ASN][1000 genomes]
rs393851	0.86[ASN][1000 genomes]
rs394087	0.86[ASN][1000 genomes]
rs394110	0.86[ASN][1000 genomes]
rs394211	0.86[ASN][1000 genomes]
rs394565	0.86[ASN][1000 genomes]
rs395383	0.86[ASN][1000 genomes]
rs397691	0.82[ASN][1000 genomes]
rs397990	0.86[ASN][1000 genomes]
rs397996	0.88[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs398591	0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs399522	0.86[ASN][1000 genomes]
rs399711	0.88[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs400019	0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs400267	0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs400544	0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs404515	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs405901	0.86[ASN][1000 genomes]
rs407095	0.86[ASN][1000 genomes]
rs409231	0.86[ASN][1000 genomes]
rs412775	0.86[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs413616	0.86[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs413852	0.86[ASN][1000 genomes]
rs414911	0.85[ASN][1000 genomes]
rs415100	0.85[ASN][1000 genomes]
rs415124	0.85[ASN][1000 genomes]
rs415848	0.86[ASN][1000 genomes]
rs416108	0.86[ASN][1000 genomes]
rs416875	0.83[ASN][1000 genomes]
rs417173	0.84[ASN][1000 genomes]
rs417191	0.83[ASN][1000 genomes]
rs419941	0.86[ASN][1000 genomes]
rs420925	0.88[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs425864	0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs428948	0.86[ASN][1000 genomes]
rs429326	0.86[ASN][1000 genomes]
rs431530	0.86[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs439888	0.88[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs440551	0.84[ASN][1000 genomes]
rs441734	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs443968	0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs445103	0.88[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs447759	0.83[ASN][1000 genomes]
rs448014	0.84[ASN][1000 genomes]
rs448332	0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs448482	0.88[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs448659	0.93[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs448687	0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs448849	0.88[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs449547	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs450183	0.86[ASN][1000 genomes]
rs451163	0.84[ASN][1000 genomes]
rs451243	0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs451370	0.86[ASN][1000 genomes]
rs451614	0.86[ASN][1000 genomes]
rs452072	0.81[ASN][1000 genomes]
rs452081	0.83[ASN][1000 genomes]
rs452107	0.86[ASN][1000 genomes]
rs452128	0.83[ASN][1000 genomes]
rs452583	0.86[ASN][1000 genomes]
rs453539	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4816543	0.83[ASN][1000 genomes]
rs914147	0.85[ASN][1000 genomes]
rs9753924	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs97959	0.83[ASN][1000 genomes]
rs9808728	0.85[ASN][1000 genomes]
rs9977245	0.85[ASN][1000 genomes]
rs9978422	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9983027	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2762111	chr21:37967924-38023546	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37973600-37978800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:37975600-37981800	Weak transcription	Right Atrium	heart
3	chr21:37977400-37979600	Enhancers	Brain Cingulate Gyrus	brain
4	chr21:37977400-37979600	Enhancers	Brain Hippocampus Middle	brain
5	chr21:37977600-37979200	Enhancers	Brain Anterior Caudate	brain
6	chr21:37977600-37979400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr21:37977600-37979400	Enhancers	Brain Substantia Nigra	brain
8	chr21:37977600-37979600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr21:37977800-37978800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr21:37977800-37979200	Enhancers	Brain Angular Gyrus	brain
11	chr21:37977800-37979600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr21:37978000-37978600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr21:37978000-37979400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr21:37978200-37978400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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