Variant report

Variant	rs9983027
Chromosome Location	chr21:37979179-37979180
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37972910..37975712-chr21:37978328..37980849,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1023150	0.84[ASN][1000 genomes]
rs1023368	0.82[ASN][1000 genomes]
rs11088359	0.81[ASN][1000 genomes]
rs13047867	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571698	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1888463	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2734398	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2734399	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2835390	0.82[CHB][hapmap]
rs2835403	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2845771	0.92[EUR][1000 genomes]
rs367166	0.85[CHB][hapmap]
rs377483	0.82[CHB][hapmap]
rs380723	0.88[EUR][1000 genomes]
rs386394	0.82[CHB][hapmap]
rs397996	0.85[CHB][hapmap]
rs398591	0.83[CHB][hapmap]
rs399711	0.85[CHB][hapmap]
rs400019	0.85[CHB][hapmap]
rs400544	0.85[CHB][hapmap]
rs412510	0.82[CHB][hapmap]
rs412775	0.85[CHB][hapmap]
rs413616	0.85[CHB][hapmap]
rs420352	0.82[CHB][hapmap]
rs420925	0.85[CHB][hapmap]
rs425864	0.84[CHB][hapmap]
rs430159	0.82[CHB][hapmap]
rs431530	0.85[CHB][hapmap]
rs431741	0.82[CHB][hapmap]
rs432137	0.82[CHB][hapmap]
rs438064	0.82[CHB][hapmap]
rs438492	0.82[CHB][hapmap]
rs439888	0.84[CHB][hapmap]
rs443968	0.83[CHB][hapmap]
rs445103	0.85[CHB][hapmap]
rs448482	0.85[CHB][hapmap]
rs448659	0.88[CHB][hapmap]
rs448849	0.85[CHB][hapmap]
rs450932	0.82[CHB][hapmap]
rs451243	0.85[CHB][hapmap]
rs4816543	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs876780	0.82[CHB][hapmap]
rs914147	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9808728	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9977245	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2762111	chr21:37967924-38023546	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37975600-37981800	Weak transcription	Right Atrium	heart
2	chr21:37977400-37979600	Enhancers	Brain Cingulate Gyrus	brain
3	chr21:37977400-37979600	Enhancers	Brain Hippocampus Middle	brain
4	chr21:37977600-37979200	Enhancers	Brain Anterior Caudate	brain
5	chr21:37977600-37979400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr21:37977600-37979400	Enhancers	Brain Substantia Nigra	brain
7	chr21:37977600-37979600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr21:37977800-37979200	Enhancers	Brain Angular Gyrus	brain
9	chr21:37977800-37979600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr21:37978000-37979400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr21:37978600-37979200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr21:37978600-37979600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr21:37978800-37979200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr21:37979000-37979200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr21:37979000-37979600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr21:37979000-37980000	Enhancers	Fetal Muscle Leg	muscle

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