Variant report

Variant	rs1023368
Chromosome Location	chr21:37985104-37985105
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37958771..37961149-chr21:37984167..37986664,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1023150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11088359	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13047867	0.96[ASN][1000 genomes]
rs1571698	0.95[ASN][1000 genomes]
rs1888463	0.96[ASN][1000 genomes]
rs2734398	0.94[ASN][1000 genomes]
rs2734399	0.95[ASN][1000 genomes]
rs2835396	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2835403	0.95[ASN][1000 genomes]
rs2845771	0.92[ASN][1000 genomes]
rs367166	0.80[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs376218	0.84[EUR][1000 genomes]
rs397996	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs398591	0.81[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs399711	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs400019	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs400267	0.81[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs400544	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs404515	0.84[EUR][1000 genomes]
rs412775	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs413616	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs420925	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs425864	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs431530	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs439888	0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs441734	0.83[EUR][1000 genomes]
rs443367	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs443968	0.81[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs445103	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs448332	0.81[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs448482	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs448659	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs448687	0.81[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs448849	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs449547	0.84[EUR][1000 genomes]
rs451243	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs453539	0.84[EUR][1000 genomes]
rs4816543	0.94[ASN][1000 genomes]
rs914147	0.96[ASN][1000 genomes]
rs9753924	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9808728	0.96[ASN][1000 genomes]
rs9976609	0.83[JPT][hapmap]
rs9977245	0.96[ASN][1000 genomes]
rs9978422	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9983027	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2762111	chr21:37967924-38023546	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37979600-37999400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:37984800-37985800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr21:37985000-37985200	Bivalent Enhancer	NHLF	lung
4	chr21:37985000-37985800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr21:37985000-37985800	Enhancers	NH-A	brain
6	chr21:37985000-37986000	Bivalent Enhancer	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links