Variant report

Variant	rs1888463
Chromosome Location	chr21:37987698-37987699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37987143..37987862-chr21:38002899..38003681,3	MCF-7	breast:
2	chr21:37987249..37987877-chr21:38299679..38300587,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1023150	0.93[ASN][1000 genomes]
rs1023368	0.96[ASN][1000 genomes]
rs11088359	0.85[ASN][1000 genomes]
rs13047867	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571698	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2734398	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2734399	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2835403	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2845771	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs367166	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs380723	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs381887	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs397996	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs398591	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs399711	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs400019	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs400267	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs400544	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs412775	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs413616	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs420925	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs425864	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs431530	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs4317012	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs439888	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs442949	0.81[AMR][1000 genomes]
rs443367	0.83[ASN][1000 genomes]
rs443968	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs445103	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs448332	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs448482	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs448659	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs448687	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs448849	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs451243	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs4816543	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs914147	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808728	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9977245	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9979549	0.81[AMR][1000 genomes]
rs9983027	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2762111	chr21:37967924-38023546	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37979600-37999400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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