Variant report

Variant	rs979464
Chromosome Location	chr9:93103388-93103389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1329093	0.95[ASN][1000 genomes]
rs2114345	0.86[JPT][hapmap]
rs2114346	0.86[JPT][hapmap]
rs2798041	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs6479594	0.85[JPT][hapmap]
rs979813	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv893564	chr9:93074228-93116944	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs979464	ALOX12	trans	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93102600-93103600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:93102600-93103600	Enhancers	Fetal Heart	heart
3	chr9:93102600-93103800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:93103000-93104200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:93103000-93105600	Weak transcription	HSMMtube	muscle
6	chr9:93103000-93105800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:93103000-93107600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:93103000-93111400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:93103200-93105600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:93103200-93105600	Weak transcription	HMEC	breast
11	chr9:93103200-93105600	Weak transcription	NHEK	skin
12	chr9:93103200-93105800	Weak transcription	HSMM	muscle
13	chr9:93103200-93106200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:93103200-93106200	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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