Variant report

Variant	rs9795216
Chromosome Location	chr11:74771955-74771956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10793111	0.81[AMR][1000 genomes]
rs10899062	0.83[AMR][1000 genomes]
rs11530865	0.81[AMR][1000 genomes]
rs4335576	0.85[AMR][1000 genomes]
rs4592443	0.82[AMR][1000 genomes]
rs4594028	0.81[AMR][1000 genomes]
rs4944066	0.82[AMR][1000 genomes]
rs4944067	0.83[AMR][1000 genomes]
rs7110411	0.83[AMR][1000 genomes]
rs7120240	0.81[AMR][1000 genomes]
rs7121374	0.82[AMR][1000 genomes]
rs7937160	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897918	chr11:74757641-74798928	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9795216	XRRA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74771400-74773400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74771400-74774800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links