Variant report

Variant	rs7121374
Chromosome Location	chr11:74779029-74779030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74775284..74777125-chr11:74778388..74781145,2	K562	blood:
2	chr11:74777918..74780984-chr11:74782589..74785289,3	K562	blood:
3	chr11:74777918..74781426-chr11:74782589..74786387,4	K562	blood:

Variant related genes	Relation type
ENSG00000234611	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10793111	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899062	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899063	0.91[ASN][1000 genomes]
rs10899066	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899075	0.85[JPT][hapmap]
rs11530865	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1944616	0.81[JPT][hapmap]
rs2712797	0.85[JPT][hapmap]
rs2712800	0.85[JPT][hapmap]
rs2712809	0.85[JPT][hapmap]
rs2712811	0.85[JPT][hapmap]
rs2851069	0.85[JPT][hapmap]
rs2851071	0.85[JPT][hapmap]
rs2851072	0.85[JPT][hapmap]
rs2851103	0.81[JPT][hapmap]
rs2851104	0.85[JPT][hapmap]
rs2919057	0.84[YRI][hapmap]
rs4335576	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4435030	0.85[JPT][hapmap]
rs4592443	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4594028	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944065	0.96[ASN][1000 genomes]
rs4944066	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944067	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594144	0.84[AFR][1000 genomes]
rs7110384	0.96[ASN][1000 genomes]
rs7110411	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7120240	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7937160	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs870505	0.81[JPT][hapmap]
rs870506	0.81[JPT][hapmap]
rs9795216	0.82[AMR][1000 genomes]
rs997465	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897918	chr11:74757641-74798928	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7121374	XRRA1	cis	Whole Blood	GTEx
rs7121374	XRRA1	cis	Muscle Skeletal	GTEx
rs7121374	XRRA1	cis	Skin Sun Exposed Lower leg	GTEx
rs7121374	XRRA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74773800-74782200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74777400-74780600	Weak transcription	K562	blood
3	chr11:74778200-74779200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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