Variant report

Variant	rs10899063
Chromosome Location	chr11:74755267-74755268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10793111	0.94[ASN][1000 genomes]
rs10899062	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10899066	0.94[ASN][1000 genomes]
rs11530865	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4335576	0.94[ASN][1000 genomes]
rs4592443	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4594028	0.88[ASN][1000 genomes]
rs4944065	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944066	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4944067	0.91[ASN][1000 genomes]
rs7110384	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110411	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7120240	0.88[ASN][1000 genomes]
rs7121374	0.91[ASN][1000 genomes]
rs7937160	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs10899063	XRRA1	cis	Esophagus Mucosa	GTEx
rs10899063	XRRA1	cis	Nerve Tibial	GTEx
rs10899063	XRRA1	cis	Thyroid	GTEx
rs10899063	XRRA1	cis	lung	GTEx
rs10899063	XRRA1	cis	Whole Blood	GTEx
rs10899063	RP11-147I3.1	cis	Thyroid	GTEx
rs10899063	XRRA1	cis	Muscle Skeletal	GTEx
rs10899063	XRRA1	Cis_1M	lymphoblastoid	RTeQTL
rs10899063	XRRA1	cis	Skin Sun Exposed Lower leg	GTEx
rs10899063	XRRA1	cis	Artery Tibial	GTEx
rs10899063	XRRA1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74751800-74755400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:74754800-74757200	Weak transcription	K562	blood
3	chr11:74755000-74757200	Enhancers	Placenta	Placenta
4	chr11:74755200-74755600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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