Variant report
| Variant | rs7110384 |
|---|---|
| Chromosome Location | chr11:74764178-74764179 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10793111 | 0.99[ASN][1000 genomes] |
| rs10899062 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10899063 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10899066 | 0.99[ASN][1000 genomes] |
| rs11530865 | 0.99[ASN][1000 genomes] |
| rs2712797 | 0.83[JPT][hapmap] |
| rs2851079 | 0.86[JPT][hapmap] |
| rs2851081 | 0.85[JPT][hapmap] |
| rs4245439 | 0.86[CHB][hapmap] |
| rs4335576 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs4592443 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4594028 | 0.92[ASN][1000 genomes] |
| rs4944065 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4944066 | 0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4944067 | 0.93[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7110411 | 0.82[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7120240 | 0.92[ASN][1000 genomes] |
| rs7121374 | 0.86[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7937160 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7938876 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv897918 | chr11:74757641-74798928 | Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:12)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7110384 | XRRA1 | cis | Thyroid | GTEx |
| rs7110384 | XRRA1 | cis | Adipose Subcutaneous | GTEx |
| rs7110384 | XRRA1 | cis | Artery Tibial | GTEx |
| rs7110384 | XRRA1 | cis | lung | GTEx |
| rs7110384 | XRRA1 | cis | Muscle Skeletal | GTEx |
| rs7110384 | XRRA1 | cis | Nerve Tibial | GTEx |
| rs7110384 | RNF169 | cis | lymphoblastoid | seeQTL |
| rs7110384 | XRRA1 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs7110384 | XRRA1 | cis | Whole Blood | GTEx |
| rs7110384 | XRRA1 | cis | Esophagus Mucosa | GTEx |
| rs7110384 | XRRA1 | cis | lymphoblastoid | seeQTL |
| rs7110384 | RP11-147I3.1 | cis | Thyroid | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:74762400-74766200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr11:74762400-74771000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
