Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:74770127..74772846-chr11:74773872..74776209,2	K562	blood:
2	chr11:74767988..74770673-chr11:75062198..75065029,2	K562	blood:
3	chr11:74769145..74771076-chr11:74811146..74813456,2	K562	blood:
4	chr11:74768855..74771237-chr11:74780461..74783497,3	MCF-7	breast:
5	chr11:74762519..74764058-chr11:74769921..74771618,2	K562	blood:
6	chr11:74770400..74772058-chr11:74780541..74783446,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793111	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899062	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899063	0.94[ASN][1000 genomes]
rs11530865	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919057	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs4245439	0.80[ASN][1000 genomes]
rs4335576	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373962	0.80[ASN][1000 genomes]
rs4592443	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4594028	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944065	0.99[ASN][1000 genomes]
rs4944066	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944067	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs594144	0.90[AFR][1000 genomes]
rs7110384	0.99[ASN][1000 genomes]
rs7110411	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120240	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7121374	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7937160	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938876	0.83[ASN][1000 genomes]
rs997465	0.91[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897918	chr11:74757641-74798928	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10899066	XRRA1	cis	Muscle Skeletal	GTEx
rs10899066	XRRA1	Cis_1M	lymphoblastoid	RTeQTL
rs10899066	XRRA1	cis	Skin Sun Exposed Lower leg	GTEx
rs10899066	XRRA1	cis	Whole Blood	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74762400-74771000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:74767400-74771000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:74769400-74771000	Enhancers	K562	blood
4	chr11:74769600-74771400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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