Variant report

Variant	rs4592443
Chromosome Location	chr11:74765168-74765169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74764412..74766619-chr11:74774749..74776362,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10793111	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899062	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899063	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10899066	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899075	0.85[JPT][hapmap]
rs11530865	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712797	0.83[JPT][hapmap]
rs2712800	0.85[JPT][hapmap]
rs2712809	0.85[JPT][hapmap]
rs2712811	0.85[JPT][hapmap]
rs2851069	0.85[JPT][hapmap]
rs2851071	0.85[JPT][hapmap]
rs2851072	0.85[JPT][hapmap]
rs2851104	0.85[JPT][hapmap]
rs2919057	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs4245439	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs4335576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373962	0.80[ASN][1000 genomes]
rs4435030	0.85[JPT][hapmap]
rs4594028	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944065	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4944066	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944067	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs594144	0.93[AFR][1000 genomes]
rs599722	0.81[AFR][1000 genomes]
rs7110384	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7110411	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120240	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7121374	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7937160	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938876	0.83[ASN][1000 genomes]
rs9795216	0.82[AMR][1000 genomes]
rs997465	0.91[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897918	chr11:74757641-74798928	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4592443	XRRA1	cis	Muscle Skeletal	GTEx
rs4592443	XRRA1	Cis_1M	lymphoblastoid	RTeQTL
rs4592443	XRRA1	cis	Skin Sun Exposed Lower leg	GTEx
rs4592443	XRRA1	cis	Whole Blood	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74762400-74766200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74762400-74771000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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