Variant report

Variant	rs1944616
Chromosome Location	chr11:74845104-74845105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74811461..74813026-chr11:74844790..74846462,2	K562	blood:
2	chr11:74844001..74846450-chr11:74934695..74936600,2	K562	blood:

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10899075	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1944615	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2018251	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156656	0.84[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs2465290	0.83[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2712786	0.86[JPT][hapmap]
rs2712788	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs2712793	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712794	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2712795	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712799	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712800	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712801	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2712802	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2712806	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712808	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2712809	0.83[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2712811	0.83[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2712815	0.83[ASN][1000 genomes]
rs2712816	0.83[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2712817	0.85[ASN][1000 genomes]
rs2712818	0.85[JPT][hapmap]
rs2851065	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851067	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851068	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851069	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851070	0.91[ASN][1000 genomes]
rs2851071	0.83[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851072	0.83[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851075	0.83[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2851078	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs2851079	0.93[JPT][hapmap]
rs2851080	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2851081	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2851082	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2851084	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs2851086	0.86[JPT][hapmap]
rs2851093	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851095	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851097	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851103	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2851104	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851105	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851107	0.84[ASN][1000 genomes]
rs2851109	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs2851112	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4435030	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4944067	0.85[JPT][hapmap]
rs7117575	0.85[YRI][hapmap]
rs7121374	0.81[JPT][hapmap]
rs870505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs870506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875482	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74842000-74851400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74844600-74846600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:74844800-74845400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:74844800-74845400	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:74844800-74845400	Enhancers	Brain Hippocampus Middle	brain
6	chr11:74844800-74845600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:74844800-74845600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:74844800-74846400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:74844800-74846400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:74845000-74845200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:74845000-74845600	Enhancers	HSMMtube	muscle
12	chr11:74845000-74846600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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