Variant report

Variant	rs1944615
Chromosome Location	chr11:74822891-74822892
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74699188..74701842-chr11:74822279..74824034,2	K562	blood:
2	chr11:74802545..74804894-chr11:74822489..74824628,2	K562	blood:

Variant related genes	Relation type
ENSG00000162139	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10899075	0.83[ASN][1000 genomes]
rs1944614	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1944616	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2018251	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2712786	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2712788	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2712793	0.86[ASN][1000 genomes]
rs2712795	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2712797	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2712799	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2712800	0.87[ASN][1000 genomes]
rs2712801	0.81[ASN][1000 genomes]
rs2712802	0.81[ASN][1000 genomes]
rs2712806	0.80[ASN][1000 genomes]
rs2851065	0.80[ASN][1000 genomes]
rs2851067	0.80[ASN][1000 genomes]
rs2851069	0.80[ASN][1000 genomes]
rs2851076	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851077	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851078	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851079	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851080	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851081	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851082	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851084	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851086	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851093	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2851095	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2851097	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2851103	0.83[ASN][1000 genomes]
rs2851104	0.85[ASN][1000 genomes]
rs2851105	0.87[ASN][1000 genomes]
rs2851107	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851112	0.80[ASN][1000 genomes]
rs4435030	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117575	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs870505	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs870506	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs875482	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs949071	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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