Variant report

Variant	rs2851067
Chromosome Location	chr11:74861328-74861329
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74860426..74862138-chr11:74866873..74869626,2	K562	blood:
2	chr11:74860782..74862620-chr11:74866728..74869676,2	MCF-7	breast:
3	chr11:74860499..74862617-chr11:74862814..74864502,2	K562	blood:

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10899075	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1944615	0.80[ASN][1000 genomes]
rs1944616	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2018251	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2156656	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2465290	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2712793	0.89[ASN][1000 genomes]
rs2712795	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2712797	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712799	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712800	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712801	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2712802	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712811	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712814	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2712815	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2712816	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2712817	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2712818	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2851065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851070	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851071	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851072	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851075	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851093	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851095	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851097	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851103	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851104	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2851105	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851109	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2851112	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs870505	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs870506	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526053	chr11:74857436-74861545	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:74853800-74862000	Enhancers	HepG2	liver
3	chr11:74853800-74862200	Enhancers	Placenta	Placenta
4	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
5	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
6	chr11:74855600-74861600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:74856600-74863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:74857400-74865600	Weak transcription	Small Intestine	intestine
9	chr11:74858200-74861400	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:74859000-74861400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:74859000-74862200	Weak transcription	Left Ventricle	heart
12	chr11:74859000-74862400	Weak transcription	Liver	Liver
13	chr11:74859000-74863800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:74859200-74861800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:74859200-74862200	Weak transcription	Right Atrium	heart
16	chr11:74859200-74862400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:74859200-74863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:74859400-74862200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr11:74859800-74862200	Weak transcription	Lung	lung
20	chr11:74860000-74861400	Weak transcription	Adipose Nuclei	Adipose
21	chr11:74860000-74861400	Weak transcription	Fetal Stomach	stomach
22	chr11:74860000-74864000	Weak transcription	Spleen	Spleen
23	chr11:74860400-74862000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr11:74860600-74861600	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr11:74860600-74862000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr11:74860600-74862200	Enhancers	Colonic Mucosa	Colon
27	chr11:74861000-74862200	Enhancers	Esophagus	oesophagus
28	chr11:74861000-74862200	Enhancers	Stomach Mucosa	stomach
29	chr11:74861000-74862400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:74861200-74861800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:74861200-74862000	Enhancers	Fetal Muscle Leg	muscle
32	chr11:74861200-74862000	Enhancers	Fetal Thymus	thymus
33	chr11:74861200-74862000	Enhancers	Pancreas	Pancrea
34	chr11:74861200-74863600	Enhancers	Gastric	stomach
35	chr11:74861200-74868400	Active TSS	Brain Hippocampus Middle	brain

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