Variant report

Variant	rs2851075
Chromosome Location	chr11:74871368-74871369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74870955..74873792-chr11:74881314..74883069,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10899075	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1676878	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1944616	0.83[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2018251	0.85[ASN][1000 genomes]
rs2156656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2465290	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712793	0.83[ASN][1000 genomes]
rs2712795	0.85[ASN][1000 genomes]
rs2712797	0.82[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2712799	0.85[ASN][1000 genomes]
rs2712800	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2712801	0.89[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2712802	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712806	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2712808	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2712809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2712811	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap];0.91[MKK][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2712814	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2712815	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712816	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712817	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712818	0.89[CHB][hapmap];0.85[CHD][hapmap];0.83[MEX][hapmap]
rs2851065	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851067	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851068	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851069	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851070	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851071	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851072	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851079	0.84[JPT][hapmap]
rs2851084	0.84[JPT][hapmap]
rs2851093	0.85[ASN][1000 genomes]
rs2851095	0.85[ASN][1000 genomes]
rs2851097	0.85[ASN][1000 genomes]
rs2851103	0.89[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2851104	0.90[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.90[MKK][hapmap];0.88[ASN][1000 genomes]
rs2851105	0.86[ASN][1000 genomes]
rs2851109	0.90[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851112	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4435030	0.82[ASW][hapmap];0.81[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.92[JPT][hapmap];0.86[MKK][hapmap]
rs7117575	0.81[MKK][hapmap]
rs870505	0.84[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs870506	0.85[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs875482	0.81[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897919	chr11:74862391-74875501	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2851075	C11orf67	cis	parietal	SCAN
rs2851075	RNF169	cis	cerebellum	SCAN
rs2851075	XRRA1	cis	cerebellum	SCAN

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74863600-74885600	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:74864200-74898400	Weak transcription	Esophagus	oesophagus
3	chr11:74865000-74872000	Enhancers	Placenta	Placenta
4	chr11:74866200-74873000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:74866400-74873000	Weak transcription	Fetal Thymus	thymus
6	chr11:74867400-74873200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:74867600-74875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:74868600-74875200	Weak transcription	Ovary	ovary
9	chr11:74869600-74871400	Enhancers	Brain Anterior Caudate	brain
10	chr11:74869800-74871600	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:74869800-74871800	Enhancers	Gastric	stomach
12	chr11:74869800-74871800	Enhancers	Pancreas	Pancrea
13	chr11:74869800-74872200	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr11:74870000-74871600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:74870000-74872800	Flanking Active TSS	Liver	Liver
16	chr11:74870000-74881000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:74870200-74871400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:74870200-74871600	Flanking Active TSS	Colonic Mucosa	Colon
19	chr11:74870200-74871600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr11:74870200-74871600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr11:74870200-74873400	Enhancers	Adipose Nuclei	Adipose
22	chr11:74870400-74871600	Enhancers	Fetal Muscle Leg	muscle
23	chr11:74870400-74871600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr11:74870400-74871600	Enhancers	Right Ventricle	heart
25	chr11:74870400-74871600	Flanking Active TSS	HepG2	liver
26	chr11:74870400-74872000	Enhancers	Right Atrium	heart
27	chr11:74870400-74872600	Flanking Active TSS	Fetal Intestine Large	intestine
28	chr11:74870400-74875000	Weak transcription	Small Intestine	intestine
29	chr11:74870600-74872000	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr11:74870800-74871400	Enhancers	Brain Substantia Nigra	brain
31	chr11:74870800-74871600	Enhancers	Fetal Stomach	stomach
32	chr11:74870800-74872200	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr11:74870800-74901600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:74871000-74871600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:74871000-74871600	Flanking Active TSS	Stomach Mucosa	stomach
36	chr11:74871000-74871600	Active TSS	Stomach Smooth Muscle	stomach
37	chr11:74871200-74871400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr11:74871200-74871400	Enhancers	Lung	lung
39	chr11:74871200-74871600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr11:74871200-74871600	Weak transcription	Spleen	Spleen
41	chr11:74871200-74872800	Weak transcription	Left Ventricle	heart
42	chr11:74871200-74873000	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:74871200-74873400	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links