Variant report

Variant	rs875482
Chromosome Location	chr11:74808284-74808285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:74807830-74808415	K562	blood:	n/a	n/a
2	JUND	chr11:74807813-74808527	K562	blood:	n/a	chr11:74808366-74808376 chr11:74808366-74808376
3	MAFK	chr11:74807468-74808328	K562	blood:	n/a	n/a
4	TRIM28	chr11:74807777-74808319	K562	blood:	n/a	n/a
5	TBL1XR1	chr11:74807769-74808524	K562	blood:	n/a	n/a
6	CEBPD	chr11:74807778-74808341	K562	blood:	n/a	n/a
7	BACH1	chr11:74807850-74808373	K562	blood:	n/a	n/a
8	ARID3A	chr11:74807950-74808543	K562	blood:	n/a	n/a
9	REST	chr11:74807869-74808321	K562	blood:	n/a	n/a
10	TAL1	chr11:74807787-74808344	K562	blood:	n/a	chr11:74808092-74808110 chr11:74807809-74807827
11	ZNF384	chr11:74807909-74808317	K562	blood:	n/a	n/a
12	IRF1	chr11:74807993-74808827	K562	blood:	n/a	n/a
13	EP300	chr11:74807627-74808534	K562	blood:	n/a	n/a
14	PML	chr11:74807794-74808312	K562	blood:	n/a	n/a
15	STAT5A	chr11:74807786-74808311	K562	blood:	n/a	n/a
16	TBL1XR1	chr11:74807897-74808477	K562	blood:	n/a	n/a
17	CUX1	chr11:74807836-74808685	K562	blood:	n/a	n/a
18	MAX	chr11:74807614-74808603	K562	blood:	n/a	n/a
19	TEAD4	chr11:74807725-74808675	K562	blood:	n/a	n/a
20	HMGN3	chr11:74807872-74808417	K562	blood:	n/a	n/a
21	CCNT2	chr11:74807743-74808424	K562	blood:	n/a	chr11:74808092-74808112 chr11:74807807-74807827
22	IRF1	chr11:74807643-74809056	K562	blood:	n/a	chr11:74808881-74808894 chr11:74808882-74808894 chr11:74808883-74808894 chr11:74808881-74808894 chr11:74808879-74808893 chr11:74808883-74808893 chr11:74808881-74808894 chr11:74808882-74808894
23	EP300	chr11:74807965-74808495	K562	blood:	n/a	n/a
24	STAT5A	chr11:74807835-74808293	K562	blood:	n/a	n/a
25	RCOR1	chr11:74807816-74808670	K562	blood:	n/a	n/a
26	ZMIZ1	chr11:74807863-74808676	K562	blood:	n/a	n/a
27	CBX3	chr11:74807649-74808735	K562	blood:	n/a	n/a
28	IRF1	chr11:74807801-74809022	K562	blood:	n/a	chr11:74808881-74808894 chr11:74808882-74808894 chr11:74808883-74808894 chr11:74808881-74808894 chr11:74808879-74808893 chr11:74808883-74808893 chr11:74808881-74808894 chr11:74808882-74808894
29	GATA1	chr11:74806999-74808509	PBDE	blood:	n/a	chr11:74807810-74807827 chr11:74808047-74808054
30	MAZ	chr11:74807474-74808427	K562	blood:	n/a	n/a
31	MYC	chr11:74807805-74808534	K562	blood:	n/a	n/a
32	CEBPD	chr11:74807734-74808360	K562	blood:	n/a	n/a
33	RCOR1	chr11:74807279-74808632	K562	blood:	n/a	n/a
34	ZNF143	chr11:74807771-74808600	K562	blood:	n/a	n/a
35	TEAD4	chr11:74807732-74808638	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:74805066..74808860-chr11:74814569..74816963,4	K562	blood:
2	chr11:74669969..74672134-chr11:74806047..74808621,2	K562	blood:
3	chr11:74807810..74809325-chr11:74810000..74811512,2	K562	blood:
4	chr11:74802408..74809371-chr11:74811514..74814356,7	K562	blood:

Variant related genes	Relation type
SLCO2B1	TF binding region
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10899075	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1944614	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1944615	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1944616	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2018251	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2156656	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs2465290	0.81[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs2712786	0.83[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2712788	0.94[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2712793	0.83[ASN][1000 genomes]
rs2712795	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2712797	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2712799	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2712800	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2712801	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2712809	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2712811	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs2712816	0.81[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs2712818	0.85[JPT][hapmap]
rs2851069	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2851071	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs2851072	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs2851075	0.81[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs2851076	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851077	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851078	0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851079	0.83[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851080	0.89[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851081	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851082	0.87[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851084	0.88[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851086	0.83[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851093	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2851095	0.85[ASN][1000 genomes]
rs2851097	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851103	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2851104	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs2851105	0.83[ASN][1000 genomes]
rs2851107	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851109	0.82[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap]
rs4435030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944067	0.85[JPT][hapmap]
rs7117575	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs870505	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs870506	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs949071	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74806400-74808800	Enhancers	Fetal Intestine Small	intestine
2	chr11:74806600-74811200	Weak transcription	A549	lung
3	chr11:74806600-74811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:74806800-74811400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:74807000-74808800	Flanking Active TSS	K562	blood
6	chr11:74807400-74811000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:74808000-74808800	Enhancers	Fetal Intestine Large	intestine
8	chr11:74808000-74814800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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