Variant report

Variant	rs2851107
Chromosome Location	chr11:74813979-74813980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74812003..74816154-chr11:74816263..74818470,5	K562	blood:
2	chr11:74723507..74725888-chr11:74813976..74816359,2	K562	blood:
3	chr11:74795794..74798553-chr11:74813017..74814712,2	K562	blood:
4	chr11:74813734..74816663-chr11:74951389..74954189,2	K562	blood:
5	chr11:74813208..74814840-chr11:74819763..74821471,2	K562	blood:
6	chr11:74809645..74812912-chr11:74813164..74816030,5	K562	blood:
7	chr11:74658596..74660669-chr11:74813822..74816180,2	K562	blood:

Variant related genes	Relation type
ENSG00000255136	Chromatin interaction
ENSG00000118363	Chromatin interaction
ENSG00000261594	Chromatin interaction
ENSG00000166435	Chromatin interaction
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1944614	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1944615	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1944616	0.84[ASN][1000 genomes]
rs2018251	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2712786	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2712788	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2712793	0.83[ASN][1000 genomes]
rs2712795	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2712797	0.84[ASN][1000 genomes]
rs2712799	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2712800	0.84[ASN][1000 genomes]
rs2851076	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851077	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851078	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851079	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851080	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851081	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851082	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851084	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851086	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2851093	0.84[ASN][1000 genomes]
rs2851095	0.85[ASN][1000 genomes]
rs2851097	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851104	0.81[ASN][1000 genomes]
rs2851105	0.83[ASN][1000 genomes]
rs4435030	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117575	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs870505	0.84[ASN][1000 genomes]
rs870506	0.84[ASN][1000 genomes]
rs875482	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949071	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74808000-74814800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74811600-74818200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:74811800-74814400	Weak transcription	HSMM	muscle
4	chr11:74811800-74816600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:74811800-74816600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:74812000-74814200	Weak transcription	NHDF-Ad	bronchial
7	chr11:74812000-74814400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:74812000-74814400	Weak transcription	Osteobl	bone
9	chr11:74812000-74814800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:74812000-74816400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:74812200-74814200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:74812200-74814400	Active TSS	K562	blood
13	chr11:74812400-74816200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:74813200-74814400	Weak transcription	GM12878-XiMat	blood
15	chr11:74813600-74814400	Weak transcription	A549	lung

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