Variant report

Variant	rs2156656
Chromosome Location	chr11:74869529-74869530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74868174..74870399-chr11:74871954..74873534,2	K562	blood:
2	chr11:74867339..74870278-chr11:74875624..74878251,3	K562	blood:
3	chr11:74860782..74862620-chr11:74866728..74869676,2	MCF-7	breast:
4	chr11:74866771..74870278-chr11:74874697..74878251,4	K562	blood:
5	chr11:74860426..74862138-chr11:74866873..74869626,2	K562	blood:

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10899075	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1676878	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1944616	0.84[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs2018251	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2465290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712793	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2712795	0.87[ASN][1000 genomes]
rs2712797	0.83[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2712799	0.88[ASN][1000 genomes]
rs2712800	0.88[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs2712801	0.85[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs2712802	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2712806	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2712808	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712814	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2712815	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2712816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712817	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712818	0.89[CHB][hapmap]
rs2851065	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851067	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851068	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2851069	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851070	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851071	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851072	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851079	0.84[JPT][hapmap]
rs2851084	0.84[JPT][hapmap]
rs2851093	0.88[ASN][1000 genomes]
rs2851095	0.87[ASN][1000 genomes]
rs2851097	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2851103	0.89[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851104	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2851105	0.89[ASN][1000 genomes]
rs2851109	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851112	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4435030	0.81[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap]
rs7117575	0.85[YRI][hapmap]
rs870505	0.84[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs870506	0.85[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs875482	0.83[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897919	chr11:74862391-74875501	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74863600-74885600	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:74864200-74898400	Weak transcription	Esophagus	oesophagus
3	chr11:74864800-74870400	Enhancers	Fetal Intestine Large	intestine
4	chr11:74865000-74872000	Enhancers	Placenta	Placenta
5	chr11:74866000-74869600	Weak transcription	Brain Substantia Nigra	brain
6	chr11:74866200-74873000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:74866400-74869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:74866400-74870000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:74866400-74871000	Weak transcription	Spleen	Spleen
10	chr11:74866400-74873000	Weak transcription	Fetal Thymus	thymus
11	chr11:74866800-74870400	Weak transcription	Left Ventricle	heart
12	chr11:74867400-74870200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:74867400-74870800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:74867400-74870800	Weak transcription	A549	lung
15	chr11:74867400-74873200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:74867600-74869800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:74867600-74869800	Weak transcription	Gastric	stomach
18	chr11:74867600-74870000	Weak transcription	Right Ventricle	heart
19	chr11:74867600-74870200	Weak transcription	Adipose Nuclei	Adipose
20	chr11:74867600-74870400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:74867600-74870400	Weak transcription	Right Atrium	heart
22	chr11:74867600-74870800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:74867600-74875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:74867800-74870000	Genic enhancers	Duodenum Mucosa	Duodenum
25	chr11:74867800-74870400	Enhancers	HepG2	liver
26	chr11:74868200-74869600	Weak transcription	Stomach Mucosa	stomach
27	chr11:74868200-74869800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:74868200-74870000	Enhancers	Liver	Liver
29	chr11:74868600-74869600	Weak transcription	Brain Anterior Caudate	brain
30	chr11:74868600-74869600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr11:74868600-74869800	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:74868600-74869800	Weak transcription	Pancreas	Pancrea
33	chr11:74868600-74870400	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:74868600-74870800	Weak transcription	Fetal Stomach	stomach
35	chr11:74868600-74875200	Weak transcription	Ovary	ovary
36	chr11:74868800-74869800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:74868800-74870000	Weak transcription	Small Intestine	intestine
38	chr11:74868800-74870600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:74869000-74869600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:74869200-74870400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:74869400-74869600	Strong transcription	Lung	lung
42	chr11:74869400-74870200	Enhancers	Colonic Mucosa	Colon
43	chr11:74869400-74870400	Genic enhancers	Fetal Intestine Small	intestine

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