Variant report

Variant	rs2712802
Chromosome Location	chr11:74855904-74855905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:74855399-74856003	K562	blood:	n/a	chr11:74855663-74855676 chr11:74855665-74855686 chr11:74855666-74855679 chr11:74855666-74855675 chr11:74855663-74855681
2	RAD21	chr11:74855334-74856000	HCT-116	colon:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
3	RAD21	chr11:74855350-74855910	HepG2	liver:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
4	RAD21	chr11:74855346-74855973	HCT-116	colon:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
5	RAD21	chr11:74855379-74855958	ECC-1	luminal epithelium:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
6	RAD21	chr11:74855215-74855962	SK-N-SH	brain:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
7	CTCF	chr11:74855369-74855961	MCF-7	breast:	n/a	chr11:74855663-74855676 chr11:74855665-74855686 chr11:74855666-74855679 chr11:74855666-74855675 chr11:74855663-74855681
8	CTCF	chr11:74855094-74856050	A549	lung:	n/a	chr11:74855663-74855676 chr11:74855665-74855686 chr11:74855666-74855679 chr11:74855666-74855675 chr11:74855663-74855681
9	RAD21	chr11:74855389-74855999	MCF-7	breast:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
10	RAD21	chr11:74855410-74855950	MCF-7	breast:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
11	RAD21	chr11:74855398-74855948	A549	lung:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
12	RAD21	chr11:74855419-74855910	A549	lung:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
13	RAD21	chr11:74855469-74855906	HepG2	liver:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
14	CTCF	chr11:74855355-74855926	HCT-116	colon:	n/a	chr11:74855663-74855676 chr11:74855665-74855686 chr11:74855666-74855679 chr11:74855666-74855675 chr11:74855663-74855681
15	RAD21	chr11:74855388-74855927	ECC-1	luminal epithelium:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
16	SMC3	chr11:74855490-74855924	HepG2	liver:	n/a	chr11:74855665-74855679 chr11:74855669-74855679
17	RAD21	chr11:74855436-74855904	HepG2	liver:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
18	CTCF	chr11:74855061-74855984	SK-N-SH	brain:	n/a	chr11:74855663-74855676 chr11:74855665-74855686 chr11:74855666-74855679 chr11:74855666-74855675 chr11:74855663-74855681
19	SMC3	chr11:74855085-74856003	SK-N-SH	brain:	n/a	chr11:74855665-74855679 chr11:74855669-74855679
20	RAD21	chr11:74855404-74855910	H1-hESC	embryonic stem cell:	n/a	chr11:74855669-74855681 chr11:74855667-74855680 chr11:74855664-74855683 chr11:74855662-74855675 chr11:74855669-74855679
21	CTCF	chr11:74855164-74856035	HCT-116	colon:	n/a	chr11:74855663-74855676 chr11:74855665-74855686 chr11:74855666-74855679 chr11:74855666-74855675 chr11:74855663-74855681

No.	Distal block	Cell Line	Cell type
1	chr11:74855244..74856442-chr11:74952713..74953475,5	MCF-7	breast:
2	chr11:74850392..74852587-chr11:74855694..74858278,2	MCF-7	breast:
3	chr11:74854818..74856886-chr11:74915338..74916882,2	K562	blood:
4	chr11:74854624..74857110-chr11:74957836..74960008,2	MCF-7	breast:
5	chr11:74854253..74855928-chr11:74871794..74874336,2	MCF-7	breast:
6	chr11:74855150..74856132-chr11:74959390..74959986,7	MCF-7	breast:
7	chr11:74733638..74734226-chr11:74855146..74856092,2	MCF-7	breast:
8	chr11:74855408..74858303-chr11:74861375..74864283,3	K562	blood:
9	chr11:74851665..74854336-chr11:74855499..74858438,2	MCF-7	breast:
10	chr11:74855198..74856149-chr11:74915693..74916307,4	K562	blood:
11	chr11:74855197..74856154-chr11:74959314..74960283,5	K562	blood:
12	chr11:74733734..74734495-chr11:74855556..74856154,2	MCF-7	breast:
13	chr11:74855250..74856195-chr11:74952793..74953318,2	K562	blood:
14	chr11:74853112..74855934-chr11:74951491..74955339,4	K562	blood:
15	chr11:74855150..74856113-chr11:74915822..74916648,7	MCF-7	breast:
16	chr11:74855227..74856388-chr11:74952126..74953604,10	MCF-7	breast:
17	chr11:74855263..74857474-chr11:74861405..74863730,2	MCF-7	breast:
18	chr11:74733565..74734291-chr11:74855193..74856678,6	K562	blood:
19	chr11:74854240..74856798-chr11:74915145..74916958,23	MCF-7	breast:
20	chr11:74853916..74856659-chr11:74959240..74960360,18	MCF-7	breast:
21	chr11:74855364..74855904-chr11:74925145..74925839,2	K562	blood:
22	chr11:74854992..74856118-chr11:74916966..74917952,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255395	TF binding region
ENSG00000137491	Chromatin interaction
ENSG00000255136	Chromatin interaction
ENSG00000255395	Chromatin interaction
ENSG00000261594	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10899075	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1676878	0.87[AFR][1000 genomes]
rs1944615	0.81[ASN][1000 genomes]
rs1944616	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2018251	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2156656	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2465290	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712793	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2712795	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712797	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2712799	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2712800	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2712801	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2712806	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712808	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2712809	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2712811	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2712814	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2712815	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2712816	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712817	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712818	0.81[EUR][1000 genomes]
rs2851065	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851067	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851068	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851069	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851070	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851071	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851072	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851075	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851093	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2851095	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851097	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2851103	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851104	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851105	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851109	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2851112	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs870505	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs870506	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:74852400-74856000	Enhancers	K562	blood
3	chr11:74852400-74858200	Weak transcription	Esophagus	oesophagus
4	chr11:74852400-74861000	Weak transcription	Stomach Mucosa	stomach
5	chr11:74853800-74856000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:74853800-74856000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:74853800-74856600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:74853800-74856600	Enhancers	Brain Hippocampus Middle	brain
9	chr11:74853800-74857800	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:74853800-74860200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:74853800-74862000	Enhancers	HepG2	liver
12	chr11:74853800-74862200	Enhancers	Placenta	Placenta
13	chr11:74854000-74856000	Enhancers	Lung	lung
14	chr11:74854000-74856000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
16	chr11:74854400-74857600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:74854400-74858400	Weak transcription	Left Ventricle	heart
18	chr11:74854400-74858400	Weak transcription	Right Atrium	heart
19	chr11:74854400-74858400	Weak transcription	Right Ventricle	heart
20	chr11:74854800-74856000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr11:74854800-74856600	Weak transcription	A549	lung
22	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
23	chr11:74855400-74856000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:74855400-74857000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:74855400-74857000	Weak transcription	Adipose Nuclei	Adipose
26	chr11:74855400-74857800	Weak transcription	Brain Anterior Caudate	brain
27	chr11:74855600-74856400	Weak transcription	Colonic Mucosa	Colon
28	chr11:74855600-74856800	Weak transcription	Small Intestine	intestine
29	chr11:74855600-74856800	Enhancers	Dnd41	blood
30	chr11:74855600-74858200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:74855600-74858200	Weak transcription	Spleen	Spleen
32	chr11:74855600-74861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:74855600-74861600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:74855800-74856200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr11:74855800-74857000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr11:74855800-74857800	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:74855800-74858000	Weak transcription	Fetal Thymus	thymus
38	chr11:74855800-74858200	Weak transcription	Liver	Liver
39	chr11:74855800-74858200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr11:74855800-74858400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:74855800-74858800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:74855800-74858800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links