Variant report

Variant	rs9805035
Chromosome Location	chr12:41605197-41605198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11179869	1.00[AMR][1000 genomes]
rs11179870	1.00[AMR][1000 genomes]
rs11179892	1.00[AMR][1000 genomes]
rs11179893	1.00[AMR][1000 genomes]
rs11180346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11180400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11180403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12297536	1.00[AMR][1000 genomes]
rs12298867	1.00[AMR][1000 genomes]
rs12300315	1.00[AMR][1000 genomes]
rs12303538	1.00[AMR][1000 genomes]
rs12304771	1.00[AMR][1000 genomes]
rs12305793	1.00[AMR][1000 genomes]
rs12311850	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12313213	0.81[AFR][1000 genomes]
rs12316685	1.00[AMR][1000 genomes]
rs12316978	1.00[AFR][1000 genomes]
rs12317058	1.00[AMR][1000 genomes]
rs12317880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12319872	1.00[AMR][1000 genomes]
rs55829782	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1051524	chr12:41409977-41643387	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41600000-41605400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:41600000-41606800	Weak transcription	Aorta	Aorta
3	chr12:41600000-41606800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr12:41602200-41607000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr12:41604400-41608000	Enhancers	Colon Smooth Muscle	Colon
6	chr12:41604800-41605200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:41604800-41606600	Enhancers	Rectal Smooth Muscle	rectum

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