Variant report

Variant	rs12316685
Chromosome Location	chr12:41471785-41471786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11179577	0.84[AFR][1000 genomes]
rs11179635	0.84[AFR][1000 genomes]
rs11179869	1.00[AMR][1000 genomes]
rs11179870	1.00[AMR][1000 genomes]
rs11179892	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11179893	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11180346	1.00[AMR][1000 genomes]
rs11180400	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11180403	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11180595	1.00[LWK][hapmap]
rs12297536	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12298802	0.84[AFR][1000 genomes]
rs12298867	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12303538	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12304771	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12305793	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306182	0.82[YRI][hapmap]
rs12307341	0.84[AFR][1000 genomes]
rs12311850	1.00[AMR][1000 genomes]
rs12313213	0.82[YRI][hapmap]
rs12317058	1.00[AMR][1000 genomes]
rs12317880	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12319621	1.00[LWK][hapmap]
rs12319872	1.00[AMR][1000 genomes]
rs61759481	1.00[AMR][1000 genomes]
rs9805035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832382	chr12:41359550-41489681	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv428587	chr12:41375635-41546845	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1051524	chr12:41409977-41643387	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3333180	chr12:41471734-41494699	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41458000-41474000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links