Variant report

Variant	rs9809935
Chromosome Location	chr3:121389528-121389529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:121380202..121382389-chr3:121387909..121390057,2	K562	blood:
2	chr3:121384342..121386908-chr3:121387953..121390169,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13316897	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13317179	1.00[AMR][1000 genomes]
rs28373454	0.84[AFR][1000 genomes]
rs9810055	0.84[AFR][1000 genomes]
rs9844563	1.00[YRI][hapmap]
rs9854234	1.00[AMR][1000 genomes]
rs9860385	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv998740	chr3:121289499-121390271	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv432480	chr3:121355723-121629928	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv432482	chr3:121364236-121629634	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv432481	chr3:121364236-121637178	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
9	nsv829703	chr3:121383290-121534493	Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121379400-121402400	Strong transcription	Fetal Intestine Large	intestine
2	chr3:121380000-121402600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:121380200-121397000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:121380400-121396400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:121380400-121396800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:121380400-121402400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:121380400-121402800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:121380400-121406600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:121380600-121413800	Weak transcription	Stomach Mucosa	stomach
10	chr3:121380800-121389600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:121381000-121391400	Strong transcription	GM12878-XiMat	blood
12	chr3:121381000-121401800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr3:121381000-121403200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:121381400-121389800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:121381400-121406800	Strong transcription	Duodenum Mucosa	Duodenum
16	chr3:121381600-121389600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:121381600-121391800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:121381600-121396600	Strong transcription	Fetal Thymus	thymus
19	chr3:121381600-121396800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr3:121381600-121396800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr3:121381600-121401600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr3:121381600-121402200	Strong transcription	Placenta	Placenta
23	chr3:121381600-121402400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr3:121381600-121402400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:121381600-121402600	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr3:121381600-121402800	Strong transcription	Liver	Liver
27	chr3:121381800-121390200	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:121381800-121390600	Strong transcription	Osteobl	bone
29	chr3:121381800-121396600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:121381800-121401200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:121381800-121402600	Strong transcription	Primary T cells from cord blood	blood
32	chr3:121382000-121401800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:121382200-121389600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:121382200-121401600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:121382400-121391200	Strong transcription	HMEC	breast
36	chr3:121382400-121401800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:121382600-121396800	Strong transcription	Adipose Nuclei	Adipose
38	chr3:121382600-121399400	Strong transcription	Left Ventricle	heart
39	chr3:121382600-121401600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr3:121382800-121402600	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr3:121383000-121390000	Strong transcription	HepG2	liver
42	chr3:121383000-121400200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:121384000-121395400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr3:121384200-121390600	Weak transcription	Fetal Heart	heart
45	chr3:121384200-121399200	Strong transcription	Fetal Muscle Leg	muscle
46	chr3:121384200-121402600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:121384600-121391800	Strong transcription	Fetal Kidney	kidney
48	chr3:121385200-121391200	Strong transcription	Fetal Lung	lung
49	chr3:121385600-121394800	Weak transcription	Colonic Mucosa	Colon
50	chr3:121385600-121398400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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