Variant report

Variant	rs9818374
Chromosome Location	chr3:78919800-78919801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78917265..78919312-chr3:78919747..78921686,2	MCF-7	breast:
2	chr3:78917237..78919813-chr3:78920275..78923386,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12330873	1.00[EUR][1000 genomes]
rs28493625	1.00[EUR][1000 genomes]
rs28722753	1.00[EUR][1000 genomes]
rs61270372	1.00[EUR][1000 genomes]
rs61490942	1.00[EUR][1000 genomes]
rs6788270	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894482	1.00[EUR][1000 genomes]
rs72894501	1.00[EUR][1000 genomes]
rs72896405	1.00[EUR][1000 genomes]
rs72896408	1.00[EUR][1000 genomes]
rs72896421	1.00[EUR][1000 genomes]
rs72896425	1.00[EUR][1000 genomes]
rs72896439	1.00[EUR][1000 genomes]
rs72896443	1.00[EUR][1000 genomes]
rs72896444	1.00[EUR][1000 genomes]
rs72896497	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72904252	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72904254	1.00[EUR][1000 genomes]
rs72904257	1.00[EUR][1000 genomes]
rs72904261	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906145	1.00[EUR][1000 genomes]
rs9808917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9813971	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817408	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9831603	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845857	0.93[AFR][1000 genomes]
rs9847098	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9849586	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9852334	0.84[AFR][1000 genomes]
rs9872429	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9876641	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv877020	chr3:78913203-78975982	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470672	chr3:78913203-78985805	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590734	chr3:78915205-78985805	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78907600-78920200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:78916200-78923000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:78916400-78921400	Enhancers	HepG2	liver
4	chr3:78917000-78920000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:78917000-78921000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:78917400-78920000	Enhancers	Brain Angular Gyrus	brain
7	chr3:78917400-78920200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:78917400-78920400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:78917400-78921200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:78917400-78921200	Weak transcription	Fetal Brain Male	brain
11	chr3:78917400-78921200	Weak transcription	Fetal Kidney	kidney
12	chr3:78917400-78921400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:78917400-78927000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:78917600-78920600	Weak transcription	NH-A	brain
15	chr3:78917600-78924400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:78918000-78919800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:78918000-78920200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:78918000-78920200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:78918000-78920200	Weak transcription	Osteobl	bone
20	chr3:78918000-78921200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:78918000-78921200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:78918000-78921400	Weak transcription	Brain Germinal Matrix	brain
23	chr3:78918000-78921400	Weak transcription	Fetal Lung	lung
24	chr3:78918000-78924800	Weak transcription	NHDF-Ad	bronchial
25	chr3:78918000-78928800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:78918000-78929800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:78918400-78919800	Enhancers	Brain Cingulate Gyrus	brain
28	chr3:78918800-78919800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:78918800-78921000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:78918800-78921400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:78918800-78927400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:78919200-78919800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:78919200-78920000	Enhancers	Brain Hippocampus Middle	brain
34	chr3:78919200-78923400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr3:78919400-78920000	Enhancers	Brain Anterior Caudate	brain
36	chr3:78919400-78920400	Enhancers	Brain Substantia Nigra	brain
37	chr3:78919400-78921800	Enhancers	H1 Cell Line	embryonic stem cell
38	chr3:78919400-78922200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr3:78919400-78923000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr3:78919600-78920000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:78919600-78920000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr3:78919600-78921000	Enhancers	A549	lung
43	chr3:78919600-78921400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr3:78919800-78921000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr3:78919800-78921400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr3:78919800-78922200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:78919800-78923000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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