Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12330873	1.00[EUR][1000 genomes]
rs28493625	1.00[EUR][1000 genomes]
rs28722753	1.00[EUR][1000 genomes]
rs61270372	1.00[EUR][1000 genomes]
rs61490942	1.00[EUR][1000 genomes]
rs6788270	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894482	1.00[EUR][1000 genomes]
rs72894501	1.00[EUR][1000 genomes]
rs72896405	1.00[EUR][1000 genomes]
rs72896408	1.00[EUR][1000 genomes]
rs72896421	1.00[EUR][1000 genomes]
rs72896425	1.00[EUR][1000 genomes]
rs72896439	1.00[EUR][1000 genomes]
rs72896443	1.00[EUR][1000 genomes]
rs72896444	1.00[EUR][1000 genomes]
rs72896497	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72904252	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72904254	1.00[EUR][1000 genomes]
rs72904257	1.00[EUR][1000 genomes]
rs72904261	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906145	1.00[EUR][1000 genomes]
rs9808917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9813971	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817408	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9831603	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845857	0.87[AFR][1000 genomes]
rs9849586	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872429	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9876641	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78905800-78916200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:78907400-78916800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:78907600-78920200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:78907800-78916200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:78911200-78913200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:78912400-78912800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:78912600-78913200	Enhancers	NHDF-Ad	bronchial
8	chr3:78912600-78916400	Weak transcription	HepG2	liver

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