Variant report

Variant	rs9818849
Chromosome Location	chr3:156524450-156524451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156521817..156525806-chr3:156525939..156530007,4	MCF-7	breast:
2	chr3:156523470..156525861-chr3:156534229..156535791,2	MCF-7	breast:
3	chr3:156388866..156397270-chr3:156524172..156537549,71	MCF-7	breast:
4	chr3:156522791..156525819-chr3:156530782..156532939,3	MCF-7	breast:
5	chr3:156511086..156512603-chr3:156522561..156524791,2	MCF-7	breast:
6	chr3:156517201..156520390-chr3:156522150..156525155,3	K562	blood:
7	chr3:156515560..156517669-chr3:156523840..156525586,2	K562	blood:
8	chr3:156424358..156426182-chr3:156523815..156525710,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-6F2.7.1-3	chr3:156522228-156525596	NONHSAT092867

No data

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction
ENSG00000240875	Chromatin interaction
ENSG00000230457	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1991618	0.83[AFR][1000 genomes]
rs57472927	0.81[AFR][1000 genomes]
rs61607068	0.83[AFR][1000 genomes]
rs6763560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6763606	0.83[AFR][1000 genomes]
rs73873733	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638335	0.85[AMR][1000 genomes]
rs9855517	0.81[AFR][1000 genomes]
rs9866769	0.83[AFR][1000 genomes]
rs9873640	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156502800-156528400	Weak transcription	Esophagus	oesophagus
2	chr3:156502800-156529000	Weak transcription	Liver	Liver
3	chr3:156511200-156529000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:156511400-156530400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:156514400-156525400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:156514400-156525800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:156517400-156529000	Weak transcription	A549	lung
8	chr3:156518000-156524800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:156518000-156529800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:156520200-156525800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:156520200-156530400	Weak transcription	Right Ventricle	heart
12	chr3:156520400-156524800	Weak transcription	NHEK	skin
13	chr3:156520400-156525800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:156522200-156525800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:156522200-156526000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:156522200-156530400	Weak transcription	Gastric	stomach
17	chr3:156522400-156529000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:156523000-156525000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:156523000-156526600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:156523400-156527400	Weak transcription	GM12878-XiMat	blood
21	chr3:156524000-156526600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:156524000-156527200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:156524200-156525000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:156524400-156525200	Enhancers	K562	blood
25	chr3:156524400-156527000	Enhancers	Osteobl	bone

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