Variant report

Variant	rs6763606
Chromosome Location	chr3:156534643-156534644
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:79824042..79825935-chr3:156533606..156535804,2	MCF-7	breast:
2	chr3:156426710..156429156-chr3:156532890..156534786,2	MCF-7	breast:
3	chr3:156391993..156392722-chr3:156534538..156535088,2	MCF-7	breast:
4	chr19:50370349..50371334-chr3:156534287..156534916,2	Hela-S3	cervix:
5	chr3:156533499..156536526-chr3:156891417..156894235,3	MCF-7	breast:
6	chr3:156388866..156397270-chr3:156524172..156537549,71	MCF-7	breast:
7	chr3:156398277..156399955-chr3:156533630..156535549,2	MCF-7	breast:
8	chr15:89631315..89632142-chr3:156534403..156535337,2	Hela-S3	cervix:
9	chr3:156397478..156399872-chr3:156533478..156536173,2	MCF-7	breast:
10	chr11:62379524..62380293-chr3:156534229..156535226,2	Hela-S3	cervix:
11	chr12:120729906..120730464-chr3:156534039..156534816,2	Hela-S3	cervix:
12	chr3:156534565..156535126-chr8:59465749..59466339,2	Hela-S3	cervix:
13	chr3:156533566..156537799-chr3:156875553..156879495,5	MCF-7	breast:
14	chr3:156533151..156536166-chr3:156876536..156878958,4	MCF-7	breast:
15	chr3:156389670..156395497-chr3:156530360..156537244,22	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000262413	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000222675	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000039650	Chromatin interaction
ENSG00000149499	Chromatin interaction
ENSG00000140526	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000261407	Chromatin interaction
ENSG00000149489	Chromatin interaction
ENSG00000243176	Chromatin interaction
ENSG00000137575	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13317783	0.83[AFR][1000 genomes]
rs13323819	1.00[AMR][1000 genomes]
rs1397191	1.00[AMR][1000 genomes]
rs16826731	1.00[AMR][1000 genomes]
rs1991618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28695987	1.00[AMR][1000 genomes]
rs56234943	1.00[AMR][1000 genomes]
rs57472927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59077786	0.81[AFR][1000 genomes]
rs60659904	1.00[AMR][1000 genomes]
rs61607068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6763560	0.83[AFR][1000 genomes]
rs6779040	1.00[AMR][1000 genomes]
rs6797924	1.00[AMR][1000 genomes]
rs73873709	1.00[AMR][1000 genomes]
rs73873711	1.00[AMR][1000 genomes]
rs7609776	1.00[AMR][1000 genomes]
rs7610539	1.00[AMR][1000 genomes]
rs7610749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620352	1.00[AMR][1000 genomes]
rs7620432	1.00[AMR][1000 genomes]
rs7625660	0.83[AFR][1000 genomes]
rs9811311	0.83[AFR][1000 genomes]
rs9814160	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9818849	0.83[AFR][1000 genomes]
rs9825950	0.86[AFR][1000 genomes]
rs9829961	1.00[AMR][1000 genomes]
rs9834930	1.00[AMR][1000 genomes]
rs9835232	1.00[AMR][1000 genomes]
rs9837209	1.00[AMR][1000 genomes]
rs9841118	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9853712	1.00[AMR][1000 genomes]
rs9855517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9866769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9870674	1.00[AMR][1000 genomes]
rs9873467	1.00[AMR][1000 genomes]
rs9873640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876941	0.83[AFR][1000 genomes]
rs9883215	0.86[AFR][1000 genomes]
rs9883478	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156533200-156535400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr3:156533200-156536200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:156533400-156535000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:156533400-156535200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr3:156533400-156535200	Active TSS	Primary T killer memory cells from peripheral blood	blood
6	chr3:156533400-156535400	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr3:156533400-156535600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr3:156533600-156535200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr3:156533600-156535200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:156533600-156535200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:156533600-156535200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:156533600-156535200	Active TSS	Brain Substantia Nigra	brain
13	chr3:156533600-156535200	Active TSS	Fetal Intestine Large	intestine
14	chr3:156533600-156535400	Active TSS	Colon Smooth Muscle	Colon
15	chr3:156533600-156535600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr3:156533600-156535600	Active TSS	Brain Anterior Caudate	brain
17	chr3:156533600-156535600	Active TSS	Brain Hippocampus Middle	brain
18	chr3:156533600-156535800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:156533600-156536000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:156533600-156536200	Active TSS	Rectal Smooth Muscle	rectum
21	chr3:156533800-156534800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
22	chr3:156533800-156535000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr3:156533800-156535000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr3:156533800-156535000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
25	chr3:156533800-156535000	Active TSS	HSMM	muscle
26	chr3:156533800-156535200	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr3:156533800-156535200	Bivalent/Poised TSS	Fetal Brain Female	brain
28	chr3:156533800-156535200	Active TSS	Fetal Kidney	kidney
29	chr3:156533800-156535200	Active TSS	Osteobl	bone
30	chr3:156533800-156535400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:156533800-156535400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
32	chr3:156533800-156535400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:156533800-156535400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:156533800-156535400	Active TSS	Brain Cingulate Gyrus	brain
35	chr3:156533800-156535400	Active TSS	Ovary	ovary
36	chr3:156533800-156535400	Active TSS	Psoas Muscle	Psoas
37	chr3:156533800-156535600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:156533800-156535600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr3:156533800-156535600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr3:156533800-156535600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:156533800-156535600	Active TSS	Thymus	Thymus
42	chr3:156533800-156535600	Flanking Active TSS	HMEC	breast
43	chr3:156533800-156535800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:156533800-156536000	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr3:156534000-156534800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr3:156534000-156535000	Active TSS	Primary T cells from cord blood	blood
47	chr3:156534000-156535000	Weak transcription	HepG2	liver
48	chr3:156534000-156535200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:156534000-156535200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:156534000-156535200	Active TSS	Gastric	stomach

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