Variant report

Variant	rs9855517
Chromosome Location	chr3:156554014-156554015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156552175..156554345-chr3:156554997..156556879,2	MCF-7	breast:
2	chr3:156542736..156546133-chr3:156552439..156555764,4	K562	blood:
3	chr3:156541425..156545674-chr3:156551760..156556464,6	K562	blood:

Variant related genes	Relation type
ENSG00000197980	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13317783	0.86[AFR][1000 genomes]
rs13323819	1.00[AMR][1000 genomes]
rs1397191	1.00[AMR][1000 genomes]
rs16826731	1.00[AMR][1000 genomes]
rs16826938	0.90[YRI][hapmap]
rs1991618	0.82[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28695987	1.00[AMR][1000 genomes]
rs56234943	1.00[AMR][1000 genomes]
rs57472927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59077786	0.83[AFR][1000 genomes]
rs60659904	1.00[AMR][1000 genomes]
rs61607068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6763560	0.81[AFR][1000 genomes]
rs6763606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779040	1.00[AMR][1000 genomes]
rs6797924	1.00[AMR][1000 genomes]
rs73873709	1.00[AMR][1000 genomes]
rs73873711	1.00[AMR][1000 genomes]
rs7609776	1.00[AMR][1000 genomes]
rs7610539	1.00[AMR][1000 genomes]
rs7610749	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620352	1.00[AMR][1000 genomes]
rs7620432	1.00[AMR][1000 genomes]
rs7625660	0.86[AFR][1000 genomes]
rs9811311	0.86[AFR][1000 genomes]
rs9814160	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9818849	0.81[AFR][1000 genomes]
rs9825950	0.83[AFR][1000 genomes]
rs9829961	1.00[AMR][1000 genomes]
rs9834930	1.00[AMR][1000 genomes]
rs9835232	1.00[AMR][1000 genomes]
rs9837209	1.00[AMR][1000 genomes]
rs9841118	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9853712	1.00[AMR][1000 genomes]
rs9866769	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9870674	1.00[AMR][1000 genomes]
rs9873467	1.00[AMR][1000 genomes]
rs9873640	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876941	0.86[AFR][1000 genomes]
rs9883215	0.83[AFR][1000 genomes]
rs9883478	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156545000-156559600	Weak transcription	Pancreas	Pancrea
2	chr3:156545800-156558000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:156552000-156555400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:156552400-156554200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr3:156552600-156554200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:156553600-156554400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:156554000-156558200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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